Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3940 ATGTCATCTCCACCAGGCCCCATTCACTTTTTCCAGATTGTTAATGAAACCAGCCTTCAAAATGGTGAATTGAGGATTCGCAGAAGTTTTGTAAGTGAACATTGGCAAGGAATATCAAGCCCGGTATTACTTGTGCTTCCTAATGGTTCCGAATGGAAGATGGACTGGGAAAAGCGTGATGCTGATGTTTGCTTTGTTCAAGGTTGGAAGGAATTTGCAGAGTTTTATTCTTTGGAAAAGGAGCAGGTTTTGATGTTCAAGTATGAAGGAAAGTCGCGGTTCAATGTTATAATACTCGGTCGGAGTGGCTTGGAAAGAGAGTATCCTTTGTTGAATGGAACTCTTGAAGCTGAAGGGAGTGGTAACTCTAAAAGGCCAAACTCTCCGTTGCGAAAAAAGAGAAGAACCAACACAGAAGAAGAAGCTAGATTCAATGAATATTCTCATAATGCAAGGCCAAGGGACAGAGATGGAAGGAGAATCTTCTTAAAATCTGAGGCTTCTAACAATGTGGAGGCACCAAAACATGCTGAAAGTAGTAGTGCTTTGGAGAGAGCCCGGGCCTTCAGTTCTAAGAATCTTTGGTTCTATCGCAGAATGAGACCAGCGTACATCAATAACTATCTTCTGTTCAGAGCAGAAGATTATGTAACACAAGAAGAAAGAAAGGAGAATGAGTTTCTCAGTCTCTGGGTTACCGATGAGAGTAGACCATGGCATGCTAAGATCTCGAAGCATGATAATAATGGACAGATAATGCTTACTACGGGTTGGAAGCAATTTGTAAGGGACAACAACCTGAAACTAAATGATGTTTGTGTTTTTGAGAAAACTAGAAATTCTGAAGGACTTTCATTTAGAGTTATTATCTACCGTGCCACGCAAGAATCAACCAATATTCCATCTCAAGATGGAGCAAACCAAAGCAACCAAACCAATGTTAGAAACAGTTTTGCTGAAAGGGGCCATGAAGGAACTTCAAAAGAATACTCAAAAAATTACAAACGTCGCGGACGTGCCAGCAAATGGACTGAAGATCAGTTCACTATCGCCTTAAAGCAAAGTCAGACGAAAAGAAGTGCGCACATACCTTATGGCTTTGCCAAAAAATATCTACAAAAAGCAAAAGCTTTGACACTGCAGATTGGGAACAGAATATGGGAGATTAAGCTAGACTATTATCCACGTCATTCCTATGCCAGATTATCTTCGGGATGGGACAAATTTGTTAAGGATTGTAATCTTAAGGAAGCAGATGAATGCACCTTTCAGCTGATAGATAGGGAGAACTTTGTATTTGATCCAGTTTCAATTGAGGTATGGAACCCAAATGGGAAATACAGAGTTGTTAGCACAAAACCAATGCCCGGAACTCGTTGGATCAATCTCCTTATCCAGCAAGATTGTCGTGTTGAAATATGTACACAGAAGAAAACAATTCTCTCAGTTGAAGACATTATTCAACTAATTGGTGATAAGTGTGATGGAGTTATTGGTCAGTTGACTGAAGACTGGGGAGAAGAGTTGTTCAAAGCTTTGAGCAGAGCTGGAGGCAAAGCTTTCAGTAACATGGCAGTTGGTTATAACAACGTTGATGTCAACGTTGCTACCAAGTATGGTGTTGCTGTTGGAAACACTCCTGGAGTTCTGACTGAGACAACGGCAGAGCTGGCAGCTTCATTGACTTTAGCGGCTGCTAGAAGGATAGTTGAGGCTGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTCCCTCATCTTTTTGTTGGAAACCTGCTGAAAGGACAAACAGTTGGTGTTATTGGAGCTGGCCGTATTGGATCGGCTTATGCAAGAATGATGTACAGTGTGTCAGATTTCACAACCAAAACTCTAATTAAGTTGATGGTGATGCCTGATGATAATATATGCATATTATGTCAACTCGACTCGAAAACTTATGGTGAATTCTTGAAAGCGAATGGCGAGAAACCAGTGACTTGGAAAAGGGCATCATCCATGGATGAGGTCCTTCAGCAGGCAGATATAATTAGTCTTCATCCTGTATTGGATAAAACCACTTATCATCTGGTTAACAAGGAGAGACTCTCCAAGATGAAGAAGGAAGCAATACTAATAAACTGCAGTAGAGGGCCTGTTATTGATGAAGCTGCACTTGTTGACCATTTGAGGGAGAATCCAATGTTTCGCGTAGGACTCGACGTGTTTGAGGATGAGCCTTACATGAAGCCTGGGCTCTCAGAGATGAAGAATGCTATTGTGGTACCTCACATTGCTTCTGCTTCTAAGTGGACTCGTGAGGGAATGGCCACACTAGCTGCTCTAAATGTTCTGGGTAAGATCAAAGGGTACCCAGTTTGGTTTGATGCCAATAGAGTGGAACCGTTTCTGAATGAGAATGCTCCACCACCAGCTGCATCCCCAAGCATTGTTAATGCAAAAGCTCTTGGTTTGCCAGTTTCAAAGCTATAG 2475 0.4178 MSSPPGPIHFFQIVNETSLQNGELRIRRSFVSEHWQGISSPVLLVLPNGSEWKMDWEKRDADVCFVQGWKEFAEFYSLEKEQVLMFKYEGKSRFNVIILGRSGLEREYPLLNGTLEAEGSGNSKRPNSPLRKKRRTNTEEEARFNEYSHNARPRDRDGRRIFLKSEASNNVEAPKHAESSSALERARAFSSKNLWFYRRMRPAYINNYLLFRAEDYVTQEERKENEFLSLWVTDESRPWHAKISKHDNNGQIMLTTGWKQFVRDNNLKLNDVCVFEKTRNSEGLSFRVIIYRATQESTNIPSQDGANQSNQTNVRNSFAERGHEGTSKEYSKNYKRRGRASKWTEDQFTIALKQSQTKRSAHIPYGFAKKYLQKAKALTLQIGNRIWEIKLDYYPRHSYARLSSGWDKFVKDCNLKEADECTFQLIDRENFVFDPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIQQDCRVEICTQKKTILSVEDIIQLIGDKCDGVIGQLTEDWGEELFKALSRAGGKAFSNMAVGYNNVDVNVATKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMYSVSDFTTKTLIKLMVMPDDNICILCQLDSKTYGEFLKANGEKPVTWKRASSMDEVLQQADIISLHPVLDKTTYHLVNKERLSKMKKEAILINCSRGPVIDEAALVDHLRENPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFLNENAPPPAASPSIVNAKALGLPVSKL* 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3940 824 ProSiteProfiles B3 DNA-binding domain profile. 9 102 IPR003340 GO:0003677
Amo19g3940 824 SMART B3_2 10 102 IPR003340 GO:0003677
Amo19g3940 824 SMART B3_2 147 294 IPR003340 GO:0003677
Amo19g3940 824 SMART B3_2 348 439 IPR003340 GO:0003677
Amo19g3940 824 SUPERFAMILY DNA-binding pseudobarrel domain 348 433 IPR015300 -
Amo19g3940 824 ProSiteProfiles B3 DNA-binding domain profile. 195 294 IPR003340 GO:0003677
Amo19g3940 824 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 448 587 - -
Amo19g3940 824 CDD B3_DNA 232 292 IPR003340 GO:0003677
Amo19g3940 824 Gene3D - 549 759 - -
Amo19g3940 824 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 551 761 IPR036291 -
Amo19g3940 824 Gene3D - 175 296 IPR015300 -
Amo19g3940 824 Gene3D - 326 439 IPR015300 -
Amo19g3940 824 Pfam B3 DNA binding domain 14 98 IPR003340 GO:0003677
Amo19g3940 824 Pfam B3 DNA binding domain 351 431 IPR003340 GO:0003677
Amo19g3940 824 Pfam B3 DNA binding domain 233 293 IPR003340 GO:0003677
Amo19g3940 824 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 459 787 - -
Amo19g3940 824 Gene3D - 6 103 IPR015300 -
Amo19g3940 824 PANTHER ZGC:136493 459 787 - -
Amo19g3940 824 CDD B3_DNA 348 438 IPR003340 GO:0003677
Amo19g3940 824 ProSiteProfiles B3 DNA-binding domain profile. 363 439 IPR003340 GO:0003677
Amo19g3940 824 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 464 784 IPR006139 GO:0016616|GO:0051287
Amo19g3940 824 SUPERFAMILY DNA-binding pseudobarrel domain 189 293 IPR015300 -
Amo19g3940 824 Gene3D - 449 784 - -
Amo19g3940 824 SUPERFAMILY DNA-binding pseudobarrel domain 3 102 IPR015300 -
Amo19g3940 824 MobiDBLite consensus disorder prediction 132 154 - -
Amo19g3940 824 MobiDBLite consensus disorder prediction 316 335 - -
Amo19g3940 824 MobiDBLite consensus disorder prediction 115 154 - -
Amo19g3940 824 MobiDBLite consensus disorder prediction 321 335 - -
Amo19g3940 824 CDD GDH 447 784 - -
Amo19g3940 824 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 664 760 IPR006140 GO:0051287
Amo19g3940 824 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 560 615 IPR006140 GO:0051287
Amo19g3940 824 CDD B3_DNA 9 99 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3940 Amo-Chr19 155136361 155142000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3940 348 440 B3 DNA Binding Superfamily AT3G18990 30.208 1.74e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo19g3940 2-Hacid_dh 9.8e-17 CL0325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3940 K15893 - ahf:112712192 845.499