Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3937 ATGGATCTTAGTTTTTGTTTCTCCTGCTTCTTGTTTGTTTGTTATTCAATTTCTCTTCTCTTGGTCTTAGTCAAAGGAATCATTAGTAGTATTCTTAAACACTTTGCATTTGGGAGTTCAAAGAAGGACTTATACTATCATCTCCTTCCATCAGGTGACAAGAACATGAACATGATGATGATGCAAAACTTAATTGAGAGACTGAGGCCTCTTGTTGGATTGAACGGTTGGGACTACTGTGTATACTGGAAACTAAGTGAAGATCAAAGGTTTGTTGAGTGGTTGGGATGCTGTTGTGGTGGCACTGATCAAAACAATAATGTTGGGGAAGACATTCACATTTTCCCATGTAGGGATACCATGTTCTCACATCCCAGAACTAACCATTGTTATCTTCTTTCTCAGCTTCCTACTTCCATTTCCATCATAGATTCTGGGTATGAAACAATTGGGACCCAGGTTTTGATTCCAGTGCCAGGTGGACTAGTTGAGCTGTTTGTAACCAAACAAGTACCTGAAGATCATCAAGTAATTGATTTTGTGACAGCACAATGCATTGTGTTGGTAGAGCAAGAAGCAGCAAACAACTCAACAAGTTTCAACATGCAATCAAATGTTGTTGGAGATGATAATAATAATAATCATAATAATAATAATAATGAAAATCAAGTGATGATGAACAACAACAACAACAACAACAATAATCAGTTTGTTCTCACAACTGCACCAGAAACTTCACCACATGATGAAATCCCCATCACTCTATGCAGTTCTCCACTCAACTTCATGCAACAGTTCAGAACAATGAATAAGAACAACGATAACAACAATAACAACAATGCATTTTCTGAAGAATATCAAGGTTCAATATTCCTCCATGAAAACCAAAACAACAATAACCAGCCAATGAAAGCAGCAGCAATGGAGGAAGAAGAAGAAGAAGAGCAGCAAGTGGGGACAAAGGAGAATAACAACAACAACAAAAATGAAGGAGGAGTTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGATCAGAACGAAGAAGAGGAAGATGGAAAATACAGAAGGAGGAATGGAAAAGGGAACCAGTCAAAGAACCTTGTTGCGGAAAGAAAGAGAAGGAAGAAACTGAATGACAGGCTGTACAATCTTCGTTCATTGGTTCCAAGAATATCCAAGCTTGATAGAGCTTCCATTCTTGGCGATGCAATTGAGTTTGTTAAGGATTTGCAAAAGCAGGTCAAGGATCTTCAAGATGAACTTGAGGACAATAACAACAATTCTGACACTACTGCTGTTGATCATCATGATAGTAGCAACCAGTTTCTTGATCATTTCGGAGCATCCTATGTTGTCCCAAATCACAAGCATATGCAGCAAGATGCAGTGGATGCCACTACTCTTACCATGGACAAGCAGCACTCCCAACAAATGGAGCCTCAAGTGGAAGTGGCAGTGATAGATGGGAAGGAGTACTTTGTGAAGGTATTCTGTGAACACAGAGCAGGTGGATTTGTGAAATTGATGGAGGCACTCAACACCTTAGGCATGGATGTTGTACATGCCACTGTCACTAGCCACAAAGGCCTTGTCTCTAATGTCTTCAAAGTTGAGAAAAAGGATAGTGATATGGTGGAGGCTGAGGATGTGAGAGACTCATTGCTAGAGCTTACAAGGAACCCATCATGTAGGGTTTGGAGTAATAATAATACAAAGAACAATAATCCCACATCGGAGAATTCCAATGGTGTTGGTGTGGGAAGGGATCATCATCATCATCATCATCATCACATGCCCGCATATCATCCCCATCCATTTCATACTTAA 1836 0.3976 MDLSFCFSCFLFVCYSISLLLVLVKGIISSILKHFAFGSSKKDLYYHLLPSGDKNMNMMMMQNLIERLRPLVGLNGWDYCVYWKLSEDQRFVEWLGCCCGGTDQNNNVGEDIHIFPCRDTMFSHPRTNHCYLLSQLPTSISIIDSGYETIGTQVLIPVPGGLVELFVTKQVPEDHQVIDFVTAQCIVLVEQEAANNSTSFNMQSNVVGDDNNNNHNNNNNENQVMMNNNNNNNNNQFVLTTAPETSPHDEIPITLCSSPLNFMQQFRTMNKNNDNNNNNNAFSEEYQGSIFLHENQNNNNQPMKAAAMEEEEEEEQQVGTKENNNNNKNEGGVVGVGRSDSMSDCSDQNEEEEDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNSDTTAVDHHDSSNQFLDHFGASYVVPNHKHMQQDAVDATTLTMDKQHSQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRNPSCRVWSNNNTKNNNPTSENSNGVGVGRDHHHHHHHHMPAYHPHPFHT* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3937 611 CDD ACT_UUR-ACR-like 497 560 - -
Amo19g3937 611 CDD bHLH_AtAMS_like 367 433 - -
Amo19g3937 611 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 367 428 IPR036638 GO:0046983
Amo19g3937 611 MobiDBLite consensus disorder prediction 568 587 - -
Amo19g3937 611 Pfam Helix-loop-helix DNA-binding domain 371 414 IPR011598 GO:0046983
Amo19g3937 611 MobiDBLite consensus disorder prediction 568 611 - -
Amo19g3937 611 MobiDBLite consensus disorder prediction 591 611 - -
Amo19g3937 611 SMART finulus 370 419 IPR011598 GO:0046983
Amo19g3937 611 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 146 569 - -
Amo19g3937 611 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 364 413 IPR011598 GO:0046983
Amo19g3937 611 MobiDBLite consensus disorder prediction 304 375 - -
Amo19g3937 611 MobiDBLite consensus disorder prediction 209 236 - -
Amo19g3937 611 Gene3D - 353 430 IPR036638 GO:0046983
Amo19g3937 611 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 146 569 - -
Amo19g3937 611 Coils Coil 403 430 - -
Amo19g3937 611 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3937 Amo-Chr19 155087873 155091752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3937 61 598 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 39.899 7.88e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g3937 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3937 - - aip:107616200 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3937 19 155087873 155091752 Amo19g3937 19 155087873 155091752 ECH