Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3929 ATGATGGACTTCGATGAATATGAGTACTTAGAGAAAGCAGTTGAGAATCCCGAGCTTAGGAAGGAGAAGGAAGCCACTAATGGCAGGAGTGGAGGTTTCAAATCAGAAGAGAAAGGGTATAGTAGGAGTTCCAGGCATAAGGATGATCGTGATGGTGATGATGATAATGATAATGATGTGGATCACCGCTCTAAGCATTCAAAATCTGGCGATGGTTCTCGTGGTGATTACGATAAGCACAAGGAAAGAGGCTCGTCGCATCGTCACTCCCGGTCCAGAGATGGAAACAAGGAGAAGGATGAGCATAGAAGCTCTAGGAGCAGCAGGGATGGGAAGAGAGATAAGGACAGAGATGATGAGGACAAGTATGGAAGGGAGCGAGACAGAGAACGTGACCGTGAAAGGGACAGGGAGAAAGAGAGCTCACGGCGAAGCAGAAGTCAATCCGAAAGGCGTAAGAGTGATCCTGATGACAGAGAAAGAGAGAGGAGTCGTGACAGGGAGCATAGAGACAGTGAAAGGAGCCGGGATAAGGATTACAGAGACAGGGAAAGGGCAAGGGAATCCAGGGAACGGGATAGAGAAAGCAGAAGACATAAAGAGAAAAAGGAAGAGGCAGCAGAACCTGAGGTTGATCCTGAAAGAGATCAAAGAACTGTGTTCGCTTATCAGATTTCTCTGAAAGCAGATGAAAGAGATGTGTATGAGTTCTTCTCAAGGGCGGGCAAGGTGCGAGATGTTCGGTTAATTATGGACCGCAATTCAAGACGCTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGCCAATTTCTTCTTGGTCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAAAATTTGGTTCAGTCCACAACATCTGTTGCTACTGGACCTGCTGGAGTTATAGGCCCATATTCAGGGGGAGCAAGAAGGCTATATGTAGGCAATCTGCATTTCAATATGACCGAAACTGATCTTCGGACGGTGTTTGAAGCATTTGGTCAGGTTGAGCTTGTCCAGCTGCCTCTTGATGAAAGTGGGAACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCACGCCTTGAAGATGCGAGAAATGCACAGAGCTTGAATGGTCAATTGGAAATTGGTGGCAGGACAATCAAGGTGTCCGCTATTACTGATCAATCTGGAATGCAAGAAGTTGGAGGAAATATTGGTGATCTTGATGATGATGAAGGTGGTGGCTTGTCCCTGAATGCCAGTTCTCGAGCATTACTCATGCAGAAGTTGAACCGCAGTGGCACTGCACCTAGCATGACTGGTTCAGCTGGTAATGCTGCTGTCAACGTCACTGGCCTTAATATGCCCGCAACAGTCGGTTCTCCCCTTTCTTCTATTCCTACGGTACCTGGATTGCCAGGTGGAGGCCTTCAAGTTCCCACACCTACCATTTCCTCTATTGATACAATTGGTGTTCCAAGTGAATGCTTACTGTTAAAGAATATGTTTGATCCCAAAGACGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAGGCAGAATGCTCTAAGTTTGGGAAGTTAAAGCACATCTTTGTCGATAAAAATAGTGCTGGTTCCGTCTACTTACGGTTCGAAAATACTCAATCCGCAATAAGTGCACAGCGTGCCCTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTATGGTTCCCCAGACATTTGAGGATAAATTCCCAGATAGCAGATGA 1785 0.4594 MMDFDEYEYLEKAVENPELRKEKEATNGRSGGFKSEEKGYSRSSRHKDDRDGDDDNDNDVDHRSKHSKSGDGSRGDYDKHKERGSSHRHSRSRDGNKEKDEHRSSRSSRDGKRDKDRDDEDKYGRERDRERDRERDREKESSRRSRSQSERRKSDPDDRERERSRDREHRDSERSRDKDYRDRERARESRERDRESRRHKEKKEEAAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQFLLGQPVMVKPSEAEKNLVQSTTSVATGPAGVIGPYSGGARRLYVGNLHFNMTETDLRTVFEAFGQVELVQLPLDESGNCKGFGFVQFARLEDARNAQSLNGQLEIGGRTIKVSAITDQSGMQEVGGNIGDLDDDEGGGLSLNASSRALLMQKLNRSGTAPSMTGSAGNAAVNVTGLNMPATVGSPLSSIPTVPGLPGGGLQVPTPTISSIDTIGVPSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGKLKHIFVDKNSAGSVYLRFENTQSAISAQRALHGRWFAGKMITASFMVPQTFEDKFPDSR* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3929 594 TIGRFAM SF-CC1: splicing factor, CC1-like family 103 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Amo19g3929 594 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 518 IPR029123 -
Amo19g3929 594 CDD RRM3_RBM39_like 499 581 - -
Amo19g3929 594 SUPERFAMILY RNA-binding domain, RBD 322 585 IPR035979 GO:0003676
Amo19g3929 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 524 576 IPR000504 GO:0003723
Amo19g3929 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Amo19g3929 594 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 287 IPR000504 GO:0003723
Amo19g3929 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Amo19g3929 594 SUPERFAMILY RNA-binding domain, RBD 213 299 IPR035979 GO:0003676
Amo19g3929 594 MobiDBLite consensus disorder prediction 1 215 - -
Amo19g3929 594 PANTHER CC1-LIKE SPLICING FACTOR 2 590 - -
Amo19g3929 594 SMART rrm2_1 323 395 IPR003954 GO:0003676
Amo19g3929 594 SMART rrm2_1 501 579 IPR003954 GO:0003676
Amo19g3929 594 Gene3D - 150 302 IPR012677 -
Amo19g3929 594 Gene3D - 303 404 IPR012677 -
Amo19g3929 594 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 295 IPR000504 GO:0003723
Amo19g3929 594 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 590 - -
Amo19g3929 594 CDD RRM1_RBM39_like 219 291 - -
Amo19g3929 594 SMART rrm1_1 323 395 IPR000504 GO:0003723
Amo19g3929 594 SMART rrm1_1 501 579 IPR000504 GO:0003723
Amo19g3929 594 SMART rrm1_1 219 291 IPR000504 GO:0003723
Amo19g3929 594 Coils Coil 185 205 - -
Amo19g3929 594 Gene3D - 495 594 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3929 Amo-Chr19 155034160 155041326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3929 219 385 Eukaryotic Initiation Factors Gene Family AT4G34110 27.811 1.32e-11 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3929 19 155034160 155041326 Amo19g3929 19 155034160 155041326 ECH