Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3924 ATGGGAGTGGATCAGAACTTTCAGGATGAGGAGGGCACCTTGGAGATAGGAATGGAATACAGAACTGTATCTGGAGTCGCTGGACCGTTGGTTATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGGAGTACCCGTCGTGGACAAGTTCTGGAGGTTGATGGCGAAAAGGCTGTGGTTCAGGTTTTTGAAGGTACATCTGGAATCGACAATAAATTTACAACAGTGCAATTTACTGGAGAGGTGTTGAAAACTCCCGTCTCACTAGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGCCCACCAATATTACCCGAAGCTTACTTGGACATATCAGGAAGTTCTATCAATCCTAGTGAGAGAACCTATCCTGAAGAAATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCTAGAGGTCAAAAGATCCCCCTGTTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATTTGCCGTCAGGCTGGCTTAGTCAAGCGATTGGAGAAAACAGATAATCTTCTTGAGCATGGAGGAGAAGATGACAATTTTGCTATTGTGTTTGCTGCTATGGGAGTTAACATGGAGACTGCACAATTTTTTAAACGTGACTTTGAGGAAAATGGCTCAATGGAGAGAGTGACCCTTTTCCTTAATTTGGCAAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCCTATGAGTGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAGGTACCAGGAAGACGTGGTTATCCGGGTTACATGTATACCGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGTCGGAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATCACTGAGGGACAGATTTACATTGACAGGCAGTTGCATAACAGACAGATATACCCACCAATCAATGTGCTTCCATCACTATCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTATATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCCGAGGATCTGCTGTATCTGGAATTCTTGGACAAATTTGAGAGGAAGTTTGTCACCCAGGGAGCCTATGACACTCGCAATATCTTCCAGTCCCTAGATCTCGCATGGACTTTGCTGCGGATCTTCCCCCGAGAGCTTCTTCATCGTATTCCAGCCAAGACCCTCGATGCTTATTACAGCCGTGATGCCGGTAACTGA 1467 0.4363 MGVDQNFQDEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEHGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAYYSRDAGN* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3924 488 ProSitePatterns ATP synthase alpha and beta subunits signature. 368 377 IPR020003 GO:0005524
Amo19g3924 488 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 19 486 IPR005723 GO:0033180|GO:0046961|GO:1902600
Amo19g3924 488 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 146 377 IPR000194 GO:0005524
Amo19g3924 488 Gene3D - 28 487 - -
Amo19g3924 488 CDD ATP-synt_V_A-type_beta_C 387 481 - -
Amo19g3924 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 5 488 IPR022879 -
Amo19g3924 488 CDD V_A-ATPase_B 91 379 - -
Amo19g3924 488 PIRSF V-ATPsynth_beta/V-ATPase_B 10 488 IPR022879 -
Amo19g3924 488 Pfam ATP synthase alpha/beta family, beta-barrel domain 23 89 IPR004100 GO:0046034|GO:1902600
Amo19g3924 488 Hamap V-type ATP synthase beta chain [atpB]. 17 486 IPR022879 -
Amo19g3924 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 383 IPR027417 -
Amo19g3924 488 CDD ATP-synt_V_A-type_beta_N 19 90 - -
Amo19g3924 488 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 5 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3924 Amo-Chr19 154969578 154974637 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3924 1 488 Primary Pumps ATPases(2) AT4G38510 95.902 0.0 960
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3924 K02147 - gmx:100814088 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3924 19 154969578 154974637 Amo19g3924 19 154969578 154974637 ECH