Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3909 ATGCTGATGGTGGCGATGCACGACAACGATACCTGCGCCACAGCCACCGCCACCGACACGGGATTGAACCACCACGTTCCTCCCGCTCCGTCCACTGCCTCCACCTCCTCCTCGCCGGCGCACACCCGCCAGCAGCGCCAGAGGCTCGAAGTCTACAATGAGGTCCTTCGCCGCCTCAAGGATTCCGGCGTCTCCGAAGCTATGCAGCCTGGCTTCGACGATCAGCTCTGGAACCACTTCAACCGCCTCCCCGCACGGTACGCGCTGGATGTGAATGTTGAGAGAGCCGCGGATGTTCTTATGCACAAGAGATTGCTGCATTTGGCTCACGATCCTGTTAATAGGCCTGCAATTGAAGTTCGCTTAGTACAGGTTCCTCCTGTAACTGATGCAAACTCAGCTTATACTGTCCAGTCGGATGCAATTGAAAATGAATCATATCAAAGCTCCCCAAAGTACTCTAGCGGACAGAGTATACATCCACCTCCTGCTTTTGGTTCTTCTCCTAATCTTGAAGCACTGGCTCTTGAAGCAAGTAATCCTGAAGAAATGGATGAGGAACATTCTGTACATGCCAGTGCACAATATTCACGGCCCATGCATGAAATCACCTTCTCAACTGATGACAAACCAAAGCTTCTCAGTCAGTTAACTGCTTTGCTTGCTGAGATTGGACTGAACATCCAAGAGGCCCATGCCTTTTCCACAACTGATGGCTACTCGTTAGATGTGTTTGTTGTTGATGGATGGCCCTATGATGAAACAGAGAAGCTTAAAACAGCGTTGGAAAAGGAGGTCATAAAGATTGAGAGGAGGTCAATGTCGAGTAGGCAATCAGTATCTTCTGTTGGCGAAGATGAAGAAGCAAGGATGAAAAGTGAATCTGATCAGTTGAATATACCTAACGATGGGACAGATGTTTGGGAGATAGATCCCAAGCATTTGAAAATTGGAACTCAAATTGCGTCTGGGTCATATGGTGAACTATTTAAAGGTATATATTGTAGCCAGGAAGTAGCCATTAAAATTCTCAAGCCTGAGCATGTAAATTCAGATTTGCAGAGAGAGTTTGTGCAGGAAGTGTACATCATGAGAAAGGTTCGACACAAAAATGTTGTACAATTTATAGGAGCTTGTACCAAGCCCCCACGCTTATGCATAGTTACAGAATTTATGTCCGGTGGTAGTGTGTATGACTACTTACATAAGCGGAAGGGTAGTTTCAAATTTCCTACCTTGCTCAAAGTTGCAATTGATGTTGCTAAAGGAATGAACTACTTGCACCAGCATGAGATAATCCATAGAGATTTGAAAGCTGCCAATCTTTTGATGGATGAAAATGGTATTGTAAAAGTTGCTGATTTTGGGGTTGCTAGAGTTAAAGCTCAGTCAGGAGTTATGACAGCAGAAACTGGAACGTATCGGTGGATGGCTCCAGAAGTTATAGAACACAAGCCGTACGATCACAAGGCTGATGTATTTAGTTTTGGAATTGTTTTATGGGAGTTGCTTACTGGAAAGCTTCCCTACGAATATTTGACACCTCTACAAGCAGCAATAGGAGTGGTTCAAAAGGGTTTACGACCAACCATCCCCAAGAACACACATCCAAACTTTGTTGAGCTTCTTGAGAGGTCTTGGCAGCAAGATCCTACGTTGAGACCCGATTTTGCAGAAATCATTGAGATCTTGCAGCAGTTAGCTAAGGAGGTTGGGGATGAAGGAGAGGAGCGGCGCAAGGATAAAACGGGAGGATTTCTGTCTGTTCTTAGAAGAGGTCATCACTGA 1788 0.4569 MLMVAMHDNDTCATATATDTGLNHHVPPAPSTASTSSSPAHTRQQRQRLEVYNEVLRRLKDSGVSEAMQPGFDDQLWNHFNRLPARYALDVNVERAADVLMHKRLLHLAHDPVNRPAIEVRLVQVPPVTDANSAYTVQSDAIENESYQSSPKYSSGQSIHPPPAFGSSPNLEALALEASNPEEMDEEHSVHASAQYSRPMHEITFSTDDKPKLLSQLTALLAEIGLNIQEAHAFSTTDGYSLDVFVVDGWPYDETEKLKTALEKEVIKIERRSMSSRQSVSSVGEDEEARMKSESDQLNIPNDGTDVWEIDPKHLKIGTQIASGSYGELFKGIYCSQEVAIKILKPEHVNSDLQREFVQEVYIMRKVRHKNVVQFIGACTKPPRLCIVTEFMSGGSVYDYLHKRKGSFKFPTLLKVAIDVAKGMNYLHQHEIIHRDLKAANLLMDENGIVKVADFGVARVKAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGIVLWELLTGKLPYEYLTPLQAAIGVVQKGLRPTIPKNTHPNFVELLERSWQQDPTLRPDFAEIIEILQQLAKEVGDEGEERRKDKTGGFLSVLRRGHH* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3909 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Amo19g3909 595 Coils Coil 252 272 - -
Amo19g3909 595 SUPERFAMILY ACT-like 200 264 IPR045865 -
Amo19g3909 595 SMART serkin_6 315 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3909 595 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 35 582 - -
Amo19g3909 595 MobiDBLite consensus disorder prediction 145 164 - -
Amo19g3909 595 MobiDBLite consensus disorder prediction 145 169 - -
Amo19g3909 595 MobiDBLite consensus disorder prediction 277 298 - -
Amo19g3909 595 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 35 582 - -
Amo19g3909 595 Gene3D Phosphorylase Kinase; domain 1 305 393 - -
Amo19g3909 595 CDD STKc_MAP3K-like 321 564 - -
Amo19g3909 595 ProSiteProfiles ACT domain profile. 202 274 IPR002912 -
Amo19g3909 595 MobiDBLite consensus disorder prediction 16 46 - -
Amo19g3909 595 Gene3D - 200 272 - -
Amo19g3909 595 SUPERFAMILY Protein kinase-like (PK-like) 301 564 IPR011009 -
Amo19g3909 595 ProSiteProfiles Protein kinase domain profile. 315 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3909 595 Gene3D Transferase(Phosphotransferase) domain 1 394 584 - -
Amo19g3909 595 MobiDBLite consensus disorder prediction 16 47 - -
Amo19g3909 595 Pfam Protein tyrosine and serine/threonine kinase 315 564 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 PRINTS Tyrosine kinase catalytic domain signature 389 402 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 PRINTS Tyrosine kinase catalytic domain signature 426 444 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 PRINTS Tyrosine kinase catalytic domain signature 472 482 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 PRINTS Tyrosine kinase catalytic domain signature 491 513 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 PRINTS Tyrosine kinase catalytic domain signature 535 557 IPR001245 GO:0004672|GO:0006468
Amo19g3909 595 CDD ACT_TyrKc 200 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3909 Amo-Chr19 154818912 154826304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3909 35 594 MAP Kinase Kinase Kinase AT4G35780 66.844 0.0 751
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo19g3909 PK_Tyr_Ser-Thr 3.5e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3909 - - gmx:100805180 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3909 19 154818912 154826304 Amo19g3909 19 154818912 154826304 ECH