Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3900 ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCTAAGCCGTACTTCTGTCACGTTTGCACCCGGAGAATCACCGTCTCCGACGAATCCGAGCCTTTCTGTCCGATTTGCCTCCAAGGCTTCGTTGAAGAATTCACCGATCCCAACCCTAACCCTAACGAAAACATCTCCTTCAGTTTCGGCCCCGATCCTTCCTCCGATGCTCAACTCCCCTTCCATCCTTTGTCCTTCCTCCCTTTCCTGCTCTCCTCCGCCGCCGCCGCCTCCACCACCATCGACCTCCAGAACCCTCGCATCTTCTCCAGTTCCTCCGGATCCACGCCGCGACATGAATTTATTCGATCCGATATGTTCGACCCGTTTATGTTTCTCCAGAACCACCTCCAAGGCCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCAGACCCAGGGTTTCGCCTTCCGGCGAACATCGGCGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAATGATCCCAACCGTTATGGTACCCCGCCGGCGTCGAAGACAGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCTGAGCATAACCAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGTAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTACACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCAACCGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGACGGTGGTGGTGATGGTTCGAGGTCTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGACGCTTCTGGGGGTAGACCTGTTCCCAGGACTTTTAGGATATCTTTGCGATACCCGTTTGGTTCGGGTGGGTCTCCGCAGGAAAGTGGCGACAGAGGATGGGAAAGTAGGCAAGAAGATTTGGATTGA 987 0.5653 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPICLQGFVEEFTDPNPNPNENISFSFGPDPSSDAQLPFHPLSFLPFLLSSAAAASTTIDLQNPRIFSSSSGSTPRHEFIRSDMFDPFMFLQNHLQGLRADGANVQFEINHPSDPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGDGGGDGSRSGGGGGGGGGGDASGGRPVPRTFRISLRYPFGSGGSPQESGDRGWESRQEDLD* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3900 328 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Amo19g3900 328 MobiDBLite consensus disorder prediction 254 268 - -
Amo19g3900 328 MobiDBLite consensus disorder prediction 253 328 - -
Amo19g3900 328 CDD RING-H2_RNF126_like 208 250 - -
Amo19g3900 328 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 310 - -
Amo19g3900 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Amo19g3900 328 SMART ring_2 209 249 IPR001841 -
Amo19g3900 328 SUPERFAMILY RING/U-box 188 257 - -
Amo19g3900 328 Pfam Ring finger domain 207 250 IPR001841 -
Amo19g3900 328 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Amo19g3900 328 PANTHER OS06G0101300 PROTEIN 9 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3900 Amo-Chr19 154695026 154697683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3900 153 265 C3H Transcription Factor Family AT5G01980 48.673 1.44e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3900 K11982 - lja:Lj5g3v2258550.1 382.104