Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3878 ATGGAGCCTCCACTCCTACCGAAGAAGCCCCTTTCCGATAAAGTTCCGAACTTTGATGCCAACAAACAAGGTGACTCTGCTCACCACCACCCGACAAGCGCGGTCACTGAGGACCAGGTCGATGAAGGCGTGGAAGGTGTGACTATGGATGAAAAGGAGCAGCTTTTGAACAGTGGTGATAATGGGCTTGAAGATTCCTCTTGTGTTCAAGAAGTTAGTGTTGTTGGAAAGAAGCGCAAAAGAAAATCTAAAAAGGAGATGCTGGAGGCCTTGGAGATCGAGAAGAAGAAGAAAGGTGATGATGATTCCGCTGCTATGACTGTGAAAATGCGTGAAAGAACAAGCGTTCCAAGTTATGCTGAGAATCTCAAAGAATATGATGATGATGAGGGTCTTGGTGAGAAGAAGAGACGTGGCAGAAAACCGAAGAACCAGAAGAAGGAAGAACGCCCTAGTAATGAAAATGATGTTCCAGATGCTGAAAATGAGTCAAAATCTGGGAAAAGGAAGTTAGAAGATCGGAACCCCAGTGATTCTGCAAATGGCAATGTTCAGGAGAAGATTCCTGGAAGGAAAAGAAAGAACTTGGATGGTGAGTTAAAGTGTGAAAATGAAAAGATGGAAAATGAGGAGTTGGGGTCTCATTCCAATGCTCAAATTGATGCTGAGACGACTTTAGATTCCTTGGAAAAAGGTGACAATCAGCGTAGATACGGTTTAAGGACGAATCGTGTGGTCAAAATGCAACAAGAGGAGCCAAAAGTCAGGAGAGACCAAAAATTCGTTGAAGAGGAGAGCTTAATGTGCCATCAATGTCAGAGGAATGATAAAGGTGGTGTAGTGAGGTGCGCTAGATGCAAGACGAAAAGATATTGCATGCCCTGTATAGAAAATTGGTATCCCAATATGAAGCCAGATGAATTTACTCTCTGTCCTGTATGCCGAGGCAATTGTAATTGCAAAGCATGTTTGCGATCTACTGATCTTATTAAGGAAATGAAGATGAGGAAAAATACCAACAACCATAAACAAGTTGATTTCTCTTTGTATTTGCTAAAAGGCGTTCTTCCATATATAAAACAGTTGGATAAAGAACAAATTGCTGAGAAAGAGTTCGAAGCTAAAAGACAAGGGCTTTCATCCTTGGAGCTAAAAATTGAAAAGGCAGATTTTCAACCAAACGAACGTGTCTACTGTGACAACTGCAAAACGTCAATATTTGATTACCACAGAAGCTGTGAAACGTGCTCTTTTGACCTGTGTCTCAGCTGTTGCCATGAATTTCGTAATGGGCAGCTTTTAGGTGGTCCAGATCCAATTGGGTTTGGGTTTGTCAACCGGGGAATCGGATATCTGCATGGTGAACCAAAACCAGAAGTAAAGGGAAAATCCAATGGATCACAGGTTCAGACTCAGGAATCACAGGCTATTCCTGTACCACGTGGGTGGTCAAGGGATGGGTGGCATGCAGAGAGTGATGGCAGCATACCCTGCCCAAAAGTCACTGAGGAGTGCTGCGGCAGATCTCTGGAGCTGAGAAGTGTATTTGGTCCAAATTTTATCTCTGAGTTAGTACACAAAGCAGATGAGCTAGCAGAAGCATATAAGCTTGACAATTCAGTTGAGATTCCTGATAGCTGGTGCTCATGTTCGACGTTGAGAAACACTGTTGATAAAAATAAAAATACAAGGAAGGCAGCTTCCCGTGAAGATTCCAGTGACAACTTTTTATACTGCCCGTCAGCTTTAGATCTACAACAGCATGATGATGTAAAACATTTTCAATGGCACTGGAGCAAAGGGGAGCCTGTGATTGTCAGCAATGTGCTCGATTGTTCATCAGGTTTGAGCTGGGAACCACTTGTCATGTGGCGTGCATGTCGTCAGATAACTAACACCAAGCATGGTATACATTTGGAGGTCGAAGCAATTGATTGCTTGGATTGGTGCGAGGCAGATGTTAATATCCATCAATTCTTTACTGGGTATTCAAGCGGACGTAAAGATTGGTGTAACTGGCCTCAGATACTGAAATTAAAAGATTGGCCACCTTCTAATTTATTTGAGGAACGTTTACCGCGTCACTGTGCTGAGTTTATATCATCCTTGCCCTACAAGGATTATACAGATCCTCTTATTGGTGCTCTTAATCTTGCTGTGAAGTTGCCGAAGGAAAGTATAAAGCCAGACATGGGGCCAAAGACATATATTGCTTATGGATTTCCGGAAGAGCTTGGGCGTGGGGATTCTGTGACTAAGCTCCACTGCGATATGTCTGATGCAGTAAATGTGCTAACTCACATTGCTGAAGTGAAATTGGATTCTAACACACGTGAAGCGATTGAGACATACAAAGCAAAGCACCTAAAGCAGGACCAGAGGGAATTGTATGGAGTTCATGAGGGAGAAACTACTGATGACACGCATAATGATTCATGTTCAGCCATAAATGCTTCTGACAAGCAAAATGGCTCTAAAGTTGTGGAAAATGAAAGTGGACTATGTGACATGAAAGTGGATGAACAGTTTCATCAAGCTTCTGGTAATGAGAGTGCAGCTGTAAATATGGATGGTCTTTGTCGCGGGTCAGAGTTGAAAGAGGCTGAAAAAGCGGAAGAACAAGAAAAAAGTATGTCAGGTGCCTTTGATGGTGCTCTCTGGGATATTTTTCGAAGAGAGGATATTCCTAAATTGCAGGAATATCTGAAAAATCATTTTAGAGAGTTTAGACATGTGTATTGCAGTCCTTTGACACAGGTCATTCATCCCATCCATGATCAGACCATGTATTTGACTGAGTATCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTCGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAGCAGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCCCTTGATTTTGTATCTCCTGAAAATCTTGGTGAGTGCTTCCGATTGACAGAGGAATTCCGCACACTCCCAATAAATCACAGGTCTTCTGAGGACAAGTTGGAGGTGAAGAAAATTACAGTACACACAATGAAAGATGTGGTTAAAAATTTGGAGGAAGCACGGTCTGGGAAAAGAGAGGTTCAGGATGTAAGTAAAAACAACTGCAAGAGAATGAAGTCAAAAAAGATGATTTGGTAG 3171 0.4245 MEPPLLPKKPLSDKVPNFDANKQGDSAHHHPTSAVTEDQVDEGVEGVTMDEKEQLLNSGDNGLEDSSCVQEVSVVGKKRKRKSKKEMLEALEIEKKKKGDDDSAAMTVKMRERTSVPSYAENLKEYDDDEGLGEKKRRGRKPKNQKKEERPSNENDVPDAENESKSGKRKLEDRNPSDSANGNVQEKIPGRKRKNLDGELKCENEKMENEELGSHSNAQIDAETTLDSLEKGDNQRRYGLRTNRVVKMQQEEPKVRRDQKFVEEESLMCHQCQRNDKGGVVRCARCKTKRYCMPCIENWYPNMKPDEFTLCPVCRGNCNCKACLRSTDLIKEMKMRKNTNNHKQVDFSLYLLKGVLPYIKQLDKEQIAEKEFEAKRQGLSSLELKIEKADFQPNERVYCDNCKTSIFDYHRSCETCSFDLCLSCCHEFRNGQLLGGPDPIGFGFVNRGIGYLHGEPKPEVKGKSNGSQVQTQESQAIPVPRGWSRDGWHAESDGSIPCPKVTEECCGRSLELRSVFGPNFISELVHKADELAEAYKLDNSVEIPDSWCSCSTLRNTVDKNKNTRKAASREDSSDNFLYCPSALDLQQHDDVKHFQWHWSKGEPVIVSNVLDCSSGLSWEPLVMWRACRQITNTKHGIHLEVEAIDCLDWCEADVNIHQFFTGYSSGRKDWCNWPQILKLKDWPPSNLFEERLPRHCAEFISSLPYKDYTDPLIGALNLAVKLPKESIKPDMGPKTYIAYGFPEELGRGDSVTKLHCDMSDAVNVLTHIAEVKLDSNTREAIETYKAKHLKQDQRELYGVHEGETTDDTHNDSCSAINASDKQNGSKVVENESGLCDMKVDEQFHQASGNESAAVNMDGLCRGSELKEAEKAEEQEKSMSGAFDGALWDIFRREDIPKLQEYLKNHFREFRHVYCSPLTQVIHPIHDQTMYLTEYHKRKLKEEYGIEPWTFVQRLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENLGECFRLTEEFRTLPINHRSSEDKLEVKKITVHTMKDVVKNLEEARSGKREVQDVSKNNCKRMKSKKMIW* 1057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3878 1056 MobiDBLite consensus disorder prediction 92 199 - -
Amo19g3878 1056 SMART cupin_9 692 998 IPR003347 -
Amo19g3878 1056 ProSiteProfiles Zinc finger RING-type profile. 269 315 IPR001841 -
Amo19g3878 1056 SUPERFAMILY Clavaminate synthase-like 590 1022 - -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 122 137 - -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 92 108 - -
Amo19g3878 1056 Gene3D Cupin 580 1007 - -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 802 825 - -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 463 478 - -
Amo19g3878 1056 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 264 331 IPR018866 -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 1 41 - -
Amo19g3878 1056 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 60 1031 - -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 459 482 - -
Amo19g3878 1056 Pfam JmjC domain, hydroxylase 885 981 IPR003347 -
Amo19g3878 1056 MobiDBLite consensus disorder prediction 809 825 - -
Amo19g3878 1056 ProSiteProfiles JmjC domain profile. 711 998 IPR003347 -
Amo19g3878 1056 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 60 1031 IPR045109 GO:0032454|GO:0033169
Amo19g3878 1056 MobiDBLite consensus disorder prediction 145 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3878 Amo-Chr19 154478865 154485833 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Amo19g3878 JmjC 1.8e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3878 K15601 - gmx:100780803 1103.97