Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3873 ATGTCGTCCGGCGAGGCCGTCGTCGGCGGAGCTAAGCCGTACTTCTGTCACGTTTGCACCCGGAGAATCACCGTCTCCGACGAATCCGAGCCTTTCTGTCCGTTTTGCCTCCAAGGCTTCGTTGAAGAATTCACCGATCCCAACCCTAACCCTAACGAAAACATCTCCTTCAGTTTCGGCCCCGATCCTTCCTCCGATGCTCAACTCCCCTTCCATCCTTTGTCCTTCCTCCCTTTCCTGCTCTCCTCCGCCGCCGCCGCCGCCTCCACCACCATCGACCTCCAGAACCCTCGCATCTTCTCCAGTTCCTCCGGATCCACGCCGCGGCATGAATTTATTCGATCCGATATGTTCGACCCATTTATGTTTCTCCAGAACCACCTCCAAGGCCTTCGCGCCGACGGAGCAAATGTACAATTCGAGATCAACCACCCTTCGGACCCAGGGTTTCGCCTTCCGGCGAACATCGGCGATTACTTCCTCGGTCCCGGCCTCGAGCAGTTGATTCAGCAGCTAGCCGAGAATGATCCCAACCGTTATGGTACCCCGCCGGCGTCGAAGACAGCCGTGGAGAATCTTCCGACGGTGACGGTGGACGACGAGTTGCTGAACTCCGAGCATAACCAGTGCGCGGTTTGCCAGGACGAGTTCGAGAAGGGGTCGCAGGTGAGGCAGATGCCTTGTAAACACGTCTATCACGATGATTGCTTGCTTCCGTGGCTTCAACTACACAATTCTTGCCCTGTTTGCCGGTATGAATTGCCAACCGACGACCCTGATTATGAGAATCGGAATCGCCAGGGGGACGGTGGTGGTGATGGTTCGAGGTCTGGCAGTGGCAGTGGCGGTGGCGGCAGCGGCAGCGGTGACGCTTCTGGGGGTAGACCTGTTCCCAGGACTTTTAGGATATCTTTGCGATACCCGTTTGGTTCGGGTGGGTCTCCGCAGGAAAGTGGCGACAGAGGATGGGAAAGTAGGCAAGAAGATTTGGATTGA 996 0.5683 MSSGEAVVGGAKPYFCHVCTRRITVSDESEPFCPFCLQGFVEEFTDPNPNPNENISFSFGPDPSSDAQLPFHPLSFLPFLLSSAAAAASTTIDLQNPRIFSSSSGSTPRHEFIRSDMFDPFMFLQNHLQGLRADGANVQFEINHPSDPGFRLPANIGDYFLGPGLEQLIQQLAENDPNRYGTPPASKTAVENLPTVTVDDELLNSEHNQCAVCQDEFEKGSQVRQMPCKHVYHDDCLLPWLQLHNSCPVCRYELPTDDPDYENRNRQGDGGGDGSRSGSGSGGGGSGSGDASGGRPVPRTFRISLRYPFGSGGSPQESGDRGWESRQEDLD* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3873 331 CDD RING-H2_RNF126_like 209 251 - -
Amo19g3873 331 PANTHER OS06G0101300 PROTEIN 9 314 - -
Amo19g3873 331 MobiDBLite consensus disorder prediction 254 331 - -
Amo19g3873 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 314 - -
Amo19g3873 331 SUPERFAMILY RING/U-box 189 258 - -
Amo19g3873 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 257 IPR013083 -
Amo19g3873 331 MobiDBLite consensus disorder prediction 270 286 - -
Amo19g3873 331 Pfam Ring finger domain 208 251 IPR001841 -
Amo19g3873 331 Pfam zinc-ribbon 13 43 IPR039525 GO:0061630
Amo19g3873 331 ProSiteProfiles Zinc finger RING-type profile. 210 251 IPR001841 -
Amo19g3873 331 SMART ring_2 210 250 IPR001841 -
Amo19g3873 331 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3873 Amo-Chr19 154446147 154447142 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3873 154 266 C3H Transcription Factor Family AT5G01980 48.673 1.25e-32 124