Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3854 ATGTCGGAGTCACCGTCTCAGCCACCGCCTCCTCCTCCAGCTCCCGAAGCGCCATCGTACTGGTGTTACCACTGCGAGAAGCGCGTCTCCGTCGAGACACTCCCTGACCTACCTGACGTCATCTGCGGTGACTGCAAGAACGGCTTCGTCGAGTCCATCCCCACTCCCTCTCTCCCTTCCTCCACTGCCGCCGCCTCCTCCTCCGACGACCCCTACTTCGGCTCTCACTTCCTCCACGTCCTCCGCCTAATCGCCCAGTCAGCGCGTGACGACGACGCTTCTCCTCCTCCTCCGCCTAGTCGCTCGCCGGAAAACGATTTCCTCCGGATCGAGCTTGGAGGCTGGGACAACGACGACGACGACGAGGATGACGATGACGACGAGGAAAACGGCATCGAGTTCCACCACGGAGGCGAAGACCGCGAAAACGCAGTCGAGGAGCGAGGAGATCGAGTCGGAAARGAGGAACCYCACGGCGACGACGAAGATCTGCGGCGGAGGAGGCGCGAGCTGCTTCGTCTCCGAATTAGGGATTTGGCGACGCGAACGAGGAGTATGCGGAACCGGATCTTGGATTGGGCCGACATCCTGATGGGCCTTGAGGACAACTCCATCGAGTTCCGCCTCCAGCTGCCGGATTCCGATCGCTACGTCGGAAACCCTGAGGACTACGTCGACGCGGCGGAGTATGAGGCCTTGCTGCAGACGCTGGCGGAGAGCGACGGGGGAGGGAGGAGGGGAGCTCCGCCGGCGGCGAAGTCTGCCGTGGAGGCGCTGCCGACAGTGAAGATCTCGTCGGAGAGCGAGGTGGTGGCGTGCGCCGTATGCAAGGACATGGTGGGCGTCGGTGACGTGGCAAAGAGGTTGCCGTGCGGGCACGAGTACCATGGAGACTGCATTGTGCCGTGGTTAGGTTCTCGAAATTCGTGCCCTGTTTGCAGGTTTGAGCTGCCAACTGATGATAGAGATTATGAAGCGGACAAGAGGAAGAACAAGAGAGTCTTCAATTCTGCTAACGGTGCTTCTGGTTCAGGTGGCGGTGGCGGTGGAGGTGGCACCTTCTCTGGTTGA 1071 0.6106 MSESPSQPPPPPPAPEAPSYWCYHCEKRVSVETLPDLPDVICGDCKNGFVESIPTPSLPSSTAAASSSDDPYFGSHFLHVLRLIAQSARDDDASPPPPPSRSPENDFLRIELGGWDNDDDDEDDDDDEENGIEFHHGGEDRENAVEERGDRVGKEEPHGDDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGLEDNSIEFRLQLPDSDRYVGNPEDYVDAAEYEALLQTLAESDGGGRRGAPPAAKSAVEALPTVKISSESEVVACAVCKDMVGVGDVAKRLPCGHEYHGDCIVPWLGSRNSCPVCRFELPTDDRDYEADKRKNKRVFNSANGASGSGGGGGGGGTFSG* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3854 356 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 34 347 - -
Amo19g3854 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 320 IPR013083 -
Amo19g3854 356 MobiDBLite consensus disorder prediction 335 356 - -
Amo19g3854 356 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 34 347 - -
Amo19g3854 356 SUPERFAMILY RING/U-box 268 320 - -
Amo19g3854 356 Pfam Ring finger domain 273 314 IPR001841 -
Amo19g3854 356 Pfam zinc-ribbon 19 53 IPR039525 GO:0061630
Amo19g3854 356 ProSiteProfiles Zinc finger RING-type profile. 273 314 IPR001841 -
Amo19g3854 356 SMART ring_2 273 313 IPR001841 -
Amo19g3854 356 MobiDBLite consensus disorder prediction 89 163 - -
Amo19g3854 356 MobiDBLite consensus disorder prediction 115 130 - -
Amo19g3854 356 MobiDBLite consensus disorder prediction 131 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3854 Amo-Chr19 154328079 154330392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3854 184 330 C3H Transcription Factor Family AT5G01980 46.104 3.64e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3854 - - adu:107467499 584.719