Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3831 ATGCCCGACAATGGAGACCATATCCATGATTTTGTCAACTCAACTTGGAGATTTTGTTCTTCTTTAGGTGGTTGGATTTCGGGTTTAATATTGAAACCTTGCAAAAAAGTGGTTGGCATAGTATTTACGAGTTCTCTTTCTAGGTTGGCTGACGGAAAGGACAATTGTTATCCTGAGTTCATGGATGAATGTATATATATTAGCTCATCAGATGATGACCTTGAGGAGATAGAAGATCCAAAAAGGAATCTCCCTCAATGGGCTGCTGCTGAAAGGAATTCAGATTATGGTGGACGGCCAAGGCACGATAGTTTTTCAAGAGGCACAAGTACTTCAGGTGCTAGCTCGTCCAATGTTAATAATACTCATTCCCAAATCAAGCTTCATGCTCAACCTGTATCTAGCAAAAATGGACTGAATCAGAGAGTTGCACGTCGAGAAGAACCTTCATATCATGCACAGAATGGAAACACAAGTCAGTCAACTCAACAGGCTTTCAAGCGGGCTCTTCCTCAAACTGTTCATCCATATACATCAAGGGTTCCACCATCTTCGTCGTTTGCACCTGATAGCAGATTAAGTAACATAAAGGATAACATGAACAATAGTCAGTTTTTCGATACATATAGGAATCGTCCCCATGGAGTAGGACCTAGCACGATGAGCGACAAGGCCTACAACCGTGGCCCATTTATGAGGGGAAGTGATGAAGATCGCTTCATGAATCAAAATGGTGTGATTAGGGTTCTTCCTCCATCTTTGATGCATGGTAAGTCTGTACCTCCACAGTATGCTAGTTCCAGTGAACCTGCATTCCGCTCTGGTGCAGGTGATGAACGGGCTCCTGGAAGTGATGAGAGACTAATTTATGAGGCCATTGTGGAGGATCTCAGTCAAAATAGAATAGAAGTTGATGTACCTGAGGGTCACATGTGTGTCTCTCTTCTTAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAGAAGTTTGCATTGCCTTGGGGGGATTTTGGCTGATGATCAGGGCCTTGGCAAGACAGTTTCAATGATTGCCCTCATCCTAATGCAGAGGTCACTGCAATCAAAATCTAAAACAGACGATGCATGCAATCATAAAACTGAAGCTTTGAATTTGGACGATGAGGATGATCGTGCTACTGTTGATTTGGAAAAGCTTGAAAATAAAGAAGAATCTGATGATGTAAAACCTAGTACAGAACCTAGTAGTTCAACACGAGCACCAAGTAGGAAAAGGCCGGCTGCTGGAACACTTGTTGTTTGCCCTGCAAGTGTTCTTCGACAATGGGCCAGAGAGCTTAAAGAAAAAGTTGTTGAAGAGCAGAGACTTGCTGTTTTGGTTTATCACGGGGGAAGTAGGACAAAGGATCCTACTGAACTTGCAAGATATGATGTGGTCCTCACAACATATGCTATTGTGACTAATGAAGTTCCAAAGCAGCCGTTGGTTGAGGAGGATGATATTGATGAAAAAATGGGGGAAAGATTTGGGATATCCTCTGAATTTTCTGCCAGTAAAAAGAGGAAGCAGTTATTTAATGGAAGTAAGAAAAGTAAAAAGGGTAGAAAGGGATTAGACGAATCTTCAATTGAATCTGCTTCTGGTCCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAACCATAGAACTCAGGTAGCTAGAGCTTGCTGCAGTCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACACCTATTCAAAATACAATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCGTTCTACAATACAATAAAAGTTCCGATATCCAGAAATTCTATCCAAGGGTACAAGAAGCTTCAGGCAGTTCTGAGGGCCATTATGCTTCGCCGTACAAAAGGAACTTTGATCGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTGAGCTGACTAAGGTGGATTTCTCCACTGAGGAGCGGGCCTTCTATATGCAGTTGGAAGCAGATTCACGTTCCCAATTTAAGGCCTATGCTGCTGCTGGCACGGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTGCGTCTTCGTCAAGCTTGTGATCACCCACGTCTTGTTAAAGATTATTATTCTGATCCTCTTGGGAAATCCTCTGTGGAAATGGCAAACTCACTTCCAAAGGAGATGTTGATTAATCTGTTTAATAGTTTGGAAACGACCTTTGCTATATGCTGTACTTGTGAGGATCCACCTGAAGACGCAGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGATTACTTGAATGGTGATGATAATACATGCCCTGCTCGTGGTTGTAAAGCAGCACTTGCAGAAGATGTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCTTGGCTGATGAACTTGGTGGTAGTAATTCCATAAAAGCGCATGATTTTGATCATTCACTAGTGCAGCAGAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGATTCTGCATTCAAATTGTAAACTGAATAGTCGTAGCTCTGGTTTACTAAATTCTGGTGGAAGCCATAGAGGTTCGCCATCTGATGATGATTCATATATTGAAGATTGCGACTCAGATGTTAGGATTATGAAAAACACAAGAAAATATTCAGACTCCACAACTGTAGGACCAATAAAAGCTATAGTTTTTTCCCAATGGACTAGCATGTTGGACTTGGTTGAGGCATCATTGCAACAATCCTGTATGAAATATAGGAGACTTGATGGGCGGATGTCTCTGATTGCTAGGGACAGATCTGTTAAAGATTTCAATACTGATCCCGAGGTAACTGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTGTGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGCTTACTGTAAAAGATACAGTTGAAGACAGAATACTGGCTCTTCAGGAAGAGAAGAGGAAAATGGTTGCATCTGCTTTTGGGGAAGAACATGCTGGCAGTTCTGCGACTCGCCTTACAATGGATGATCTGAAATATCTTTTCATGGTGTAG 3204 0.4132 MPDNGDHIHDFVNSTWRFCSSLGGWISGLILKPCKKVVGIVFTSSLSRLADGKDNCYPEFMDECIYISSSDDDLEEIEDPKRNLPQWAAAERNSDYGGRPRHDSFSRGTSTSGASSSNVNNTHSQIKLHAQPVSSKNGLNQRVARREEPSYHAQNGNTSQSTQQAFKRALPQTVHPYTSRVPPSSSFAPDSRLSNIKDNMNNSQFFDTYRNRPHGVGPSTMSDKAYNRGPFMRGSDEDRFMNQNGVIRVLPPSLMHGKSVPPQYASSSEPAFRSGAGDERAPGSDERLIYEAIVEDLSQNRIEVDVPEGHMCVSLLRHQKIALAWMLQKETRSLHCLGGILADDQGLGKTVSMIALILMQRSLQSKSKTDDACNHKTEALNLDDEDDRATVDLEKLENKEESDDVKPSTEPSSSTRAPSRKRPAAGTLVVCPASVLRQWARELKEKVVEEQRLAVLVYHGGSRTKDPTELARYDVVLTTYAIVTNEVPKQPLVEEDDIDEKMGERFGISSEFSASKKRKQLFNGSKKSKKGRKGLDESSIESASGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIELTKVDFSTEERAFYMQLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYYSDPLGKSSVEMANSLPKEMLINLFNSLETTFAICCTCEDPPEDAVVTMCGHVFCYQCVSDYLNGDDNTCPARGCKAALAEDVVFSKATLRSCLADELGGSNSIKAHDFDHSLVQQSEYSSSKIKAVLEILHSNCKLNSRSSGLLNSGGSHRGSPSDDDSYIEDCDSDVRIMKNTRKYSDSTTVGPIKAIVFSQWTSMLDLVEASLQQSCMKYRRLDGRMSLIARDRSVKDFNTDPEVTVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRLTVKDTVEDRILALQEEKRKMVASAFGEEHAGSSATRLTMDDLKYLFMV* 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3831 1067 MobiDBLite consensus disorder prediction 258 282 - -
Amo19g3831 1067 Pfam SNF2-related domain 318 723 IPR000330 GO:0005524|GO:0140658
Amo19g3831 1067 Gene3D - 412 501 IPR038718 -
Amo19g3831 1067 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 85 1066 - -
Amo19g3831 1067 MobiDBLite consensus disorder prediction 76 141 - -
Amo19g3831 1067 SUPERFAMILY RING/U-box 758 807 - -
Amo19g3831 1067 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 330 607 IPR014001 -
Amo19g3831 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 645 IPR027417 -
Amo19g3831 1067 Gene3D - 660 1066 IPR027417 -
Amo19g3831 1067 MobiDBLite consensus disorder prediction 519 539 - -
Amo19g3831 1067 CDD SF2_C_SNF 914 1019 - -
Amo19g3831 1067 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 1066 IPR027417 -
Amo19g3831 1067 Gene3D - 285 378 IPR038718 -
Amo19g3831 1067 MobiDBLite consensus disorder prediction 394 424 - -
Amo19g3831 1067 CDD DEXDc_SHPRH-like 315 645 - -
Amo19g3831 1067 Coils Coil 379 399 - -
Amo19g3831 1067 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 748 811 IPR013083 -
Amo19g3831 1067 SMART helicmild6 926 1009 IPR001650 -
Amo19g3831 1067 MobiDBLite consensus disorder prediction 203 227 - -
Amo19g3831 1067 MobiDBLite consensus disorder prediction 104 140 - -
Amo19g3831 1067 Pfam Helicase conserved C-terminal domain 914 1009 IPR001650 -
Amo19g3831 1067 Pfam Zinc finger, C3HC4 type (RING finger) 761 797 IPR018957 GO:0046872
Amo19g3831 1067 Gene3D - 511 656 IPR038718 -
Amo19g3831 1067 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 85 1066 - -
Amo19g3831 1067 ProSiteProfiles Zinc finger RING-type profile. 761 797 IPR001841 -
Amo19g3831 1067 ProSitePatterns Zinc finger RING-type signature. 776 785 IPR017907 -
Amo19g3831 1067 SMART ultradead3 311 624 IPR014001 -
Amo19g3831 1067 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1062 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3831 Amo-Chr19 154096980 154105207 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3831 61 967 RAD5 or RAD16-like Gene Family AT1G50410 54.749 0.0 903
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Amo19g3831 SNF2_N 1.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3831 - - lang:109335781 1528.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3831 19 154096980 154105207 Amo19g3831 19 154096980 154105207 ECH