Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3830 ATGAAGGGTGGATTAGAGGGACACGTCATCGATCCGCGGCATCCCCCTATAAGCGAAATGCAAAGCGCGGGGAGGAAGAGAGTGGACGCCGTTGATTCTCGATCTGCGTCGGTTCTTGTTCGCGCCAAGGATGGCAGCGCTTTCGCCAAATGCGATGAGTGCAAGAAGGATGTTCCTGTTGCCCTCATCAGCATGCATAGTTGCAGCCTCGAAGCCAAAATCAAAATGAATCTCGAGGCACAAGTTGTGGAACAGGCTTCGGAAGTGAAGAAACCAGAGAGGAAGAAGCCGAAATCTAATGAGCCAAAGGCTAAAAGAGCGAAAGTTGAGAAGACGAAGAAGGTGAAAGATCCAAATGCGCCAAAGCGTCCTCCCACAGCTTTCTTTCTCTTCATGGATGATTTTAGAAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATGTTAAGAGGGTTAGTAAAGAGGCTGGTGAGAAATGGAGGTCCATGACTGATGAAGAGAAGAAGCCTTATTCCGATAAAGTTATTGAGCTTAAAGCAGAATACGAGAAGGCTATGAAAAATGCTGCTGGTGAAGACGAGGAGTTGACTGACGAGGAGGTCGATGAGAGGGACACGTCATCGATCCGCGGCATCCCACAATGGGCGAAATGCAAAGCGCGGTTTTTGGCGCTAAAAAGCCAAAAAAATTTCGCCATGAAACCACGAACCAGTGAAAGTGAAGAAGAAAGTGGAAAATTGGGAGAGGGAAGCAGCACATCGCAGGGGCAGAGAGTCGACGCAGTTGAATCTCGATCCTCGTCGGTTATTGTTCGCGGCAGGGATGGCAGCGCTTTCGTCAAATGCCAAGACTGCAAAGAGGACGTTCCTGTTGGACTTGTCAGCATGCATGGTTGCAGCGACGAAGCCAAAACTAAAATGAATCTCGCTAAGAGACCAGTGAGGAAGAAGACAAGATCTGATGTACCAAAGGCTAAAAGGGCCAAAGTTGAGAAGACGAAGAAGGTGAAAGATCCACACGTGCCAAAGAAGCCTCCAGCAGCATCCTTCTTTCTCTTCATGGATGATTTTGAGAAATCTTTTAAGGAGGCAAATCCTGATTCAAAGGATGATAACAGGGTTTTTAAAGAGGCTCGTGCCAAATGGAGGTCCATGACTGCTGAAGAGAAGAAGCCTTATTCTGATAAACTTGCTGAACTTAAAGCAGAATATGAGAAGGCTATGGAAATTTACAATGCTGCTGAAGCAGAAGGAGAAGAGGGAGAAGGTGAAGGAGAGCATGAAGAGGGGACTGATGAACAATCTGATAAAGAAGAAGCTGCTGCAGGTGAAGAGGAGGAGCTGAATGATGAGGACTAA 1359 0.4687 MKGGLEGHVIDPRHPPISEMQSAGRKRVDAVDSRSASVLVRAKDGSAFAKCDECKKDVPVALISMHSCSLEAKIKMNLEAQVVEQASEVKKPERKKPKSNEPKAKRAKVEKTKKVKDPNAPKRPPTAFFLFMDDFRKSFKEANPDSKDVKRVSKEAGEKWRSMTDEEKKPYSDKVIELKAEYEKAMKNAAGEDEELTDEEVDERDTSSIRGIPQWAKCKARFLALKSQKNFAMKPRTSESEEESGKLGEGSSTSQGQRVDAVESRSSSVIVRGRDGSAFVKCQDCKEDVPVGLVSMHGCSDEAKTKMNLAKRPVRKKTRSDVPKAKRAKVEKTKKVKDPHVPKKPPAASFFLFMDDFEKSFKEANPDSKDDNRVFKEARAKWRSMTAEEKKPYSDKLAELKAEYEKAMEIYNAAEAEGEEGEGEGEHEEGTDEQSDKEEAAAGEEEELNDED* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3830 452 MobiDBLite consensus disorder prediction 411 452 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 84 125 - -
Amo19g3830 452 SUPERFAMILY HMG-box 329 414 IPR036910 -
Amo19g3830 452 Coils Coil 175 199 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 141 169 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 229 268 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 189 208 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 306 347 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 247 264 - -
Amo19g3830 452 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 253 436 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 324 342 - -
Amo19g3830 452 Gene3D High mobility group box domain 106 188 IPR036910 -
Amo19g3830 452 MobiDBLite consensus disorder prediction 415 452 - -
Amo19g3830 452 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 206 - -
Amo19g3830 452 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 343 412 IPR009071 -
Amo19g3830 452 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 253 436 - -
Amo19g3830 452 SUPERFAMILY HMG-box 112 188 IPR036910 -
Amo19g3830 452 Gene3D High mobility group box domain 325 423 IPR036910 -
Amo19g3830 452 Pfam HMG (high mobility group) box 121 188 IPR009071 -
Amo19g3830 452 Pfam HMG (high mobility group) box 344 412 IPR009071 -
Amo19g3830 452 Coils Coil 397 417 - -
Amo19g3830 452 SMART hmgende2 120 191 IPR009071 -
Amo19g3830 452 SMART hmgende2 342 413 IPR009071 -
Amo19g3830 452 MobiDBLite consensus disorder prediction 86 120 - -
Amo19g3830 452 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 121 190 IPR009071 -
Amo19g3830 452 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 22 206 - -
Amo19g3830 452 CDD HMGB-UBF_HMG-box 121 187 - -
Amo19g3830 452 CDD HMGB-UBF_HMG-box 342 409 - -
Amo19g3830 452 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3830 Amo-Chr19 154057259 154060503 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Amo19g3830 HMG_box 2.1e-13 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3830 K25507 - gmx:100810345 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3830 19 154057259 154060503 Amo19g3830 19 154057259 154060503 ECH