Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3822 ATGCATATATATATCAAGGTCTCAAACTGCCGCTGGTTGCCGGGGTGGGGGACTGTCCCCTGCATGCAGGTAGGTCTGGCAACACGCCCCCCGCGTGAAGATGATGATGAGACTTGCTCCATTTGCTTGGTGGAGTTTGAAGATGAAGATGCTGTGAGTAAGCTTAGAAGGTGTAACCACATATTTCATCTTAGTTGCATTCAACAATGGATAGAGCGAAATCAATTCTCATGCCCACTTTGTAGGTCATTTTTATTTTCTCATAATCTTCATACCAAAGAATTCAATGAATACTAG 297 0.4343 MHIYIKVSNCRWLPGWGTVPCMQVGLATRPPREDDDETCSICLVEFEDEDAVSKLRRCNHIFHLSCIQQWIERNQFSCPLCRSFLFSHNLHTKEFNEY* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3822 98 SMART ring_2 39 81 IPR001841 -
Amo19g3822 98 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 96 IPR013083 -
Amo19g3822 98 PANTHER RING ZINC FINGER PROTEIN-RELATED 32 86 - -
Amo19g3822 98 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 32 86 - -
Amo19g3822 98 SUPERFAMILY RING/U-box 29 87 - -
Amo19g3822 98 Pfam Ring finger domain 38 82 IPR001841 -
Amo19g3822 98 ProSiteProfiles Zinc finger RING-type profile. 39 82 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3822 Amo-Chr19 153982018 153984129 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3822 24 96 C3H Transcription Factor Family AT4G38140 45.205 3.51e-19 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3822 - - pvu:PHAVU_007G012000g 100.908