Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3810 ATGATGACGTGGACCATCAAGAGAGAAAGAGAGCCTGAAAGCATAGCCATGGCCAACTATCTCATGCTGCTTTCTGGTGGTGCAGGACTTGAGAGAACCACCACCACCACCACCAGCAACAACCGTGTATTCGAGTGCAAGACATGTAACAGGCAATTCTCGTCGTTTCAGGCACTGGGAGGCCACCGTGCAAGCCACAAGAAGCCGAGGCTCATGAACGGAGAAGACAGCAGTAGTGATGATAGCCATGGCTCTCCGGCAAAGCCTAAGACTCACGAGTGCTCCGTTTGCGGCTTGGAGTTCGCCATTGGCCAAGCTTTGGGTGGCCACATGAGGCGTCACAGAACAGCACCGCCACCACCACCGCCGCCACCTTCTTCAGACGTGACTAGCAATAATAAAAGAAAGAGAGAAGTTATGTTTGTGGATCTGAACTTGACTCCCTTTGAGAATGATTTGGCATTCTTGAAGATTGGACAACCAACAATAACTCATCCTCCTAACTTGGTCCATTGTTTGTAA 522 0.5019 MMTWTIKREREPESIAMANYLMLLSGGAGLERTTTTTTSNNRVFECKTCNRQFSSFQALGGHRASHKKPRLMNGEDSSSDDSHGSPAKPKTHECSVCGLEFAIGQALGGHMRRHRTAPPPPPPPPSSDVTSNNKRKREVMFVDLNLTPFENDLAFLKIGQPTITHPPNLVHCL* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3810 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Amo19g3810 173 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Amo19g3810 173 MobiDBLite consensus disorder prediction 59 92 - -
Amo19g3810 173 PANTHER ZINC FINGER PROTEIN ZAT12 16 153 - -
Amo19g3810 173 SMART c2h2final6 92 114 IPR013087 -
Amo19g3810 173 SMART c2h2final6 44 66 IPR013087 -
Amo19g3810 173 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Amo19g3810 173 Pfam C2H2-type zinc finger 92 116 - -
Amo19g3810 173 Pfam C2H2-type zinc finger 43 69 - -
Amo19g3810 173 PANTHER ZINC FINGER PROTEIN ZAT5 16 153 - -
Amo19g3810 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Amo19g3810 173 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
Amo19g3810 173 MobiDBLite consensus disorder prediction 108 133 - -
Amo19g3810 173 MobiDBLite consensus disorder prediction 68 88 - -
Amo19g3810 173 Gene3D Classic Zinc Finger 41 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3810 Amo-Chr19 153916641 153917522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3810 6 156 C2H2 Transcription Factor Family AT2G37430 44.970 3.77e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g3810 zf-C2H2_6 9.9e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3810 - - pvu:PHAVU_008G014600g 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3810 19 153916641 153917522 Amo19g3810 19 153916641 153917522 ECH