Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3795 ATGGTGTCGGTGCTGCCGTATGCAGATGTTGATTCCAGTTTGAGGGCCCTTGCTGGTTCCGCCGAGGGCTTCGGCCGCCACGCCATCGGTGGCCTCCACGGTTCTCTCTATATCGTCACCACCCTTTCAGACGATGGTCCAGGGTCCCTTCGCCAGGGGTGTCGTGAAAAGGAGCCACTGTGGATTGTTTTTGGAGTCTCCGGTACAATTCACCTTTCGTCGTACCTGAGTGTGTCATCTTACAAAACAATAGATGGCCGAGGGCAGAGAATAAAACTAACTGGAAAGGGTTTAAGGCTGAAAGAATGTGAGCACATAATTGTTTGCAACCTTGAGTTTGAAGGTGGTAGGGGTCATGATGTCGATGGCATTCAGATAAAACCAAATTCCAGGCACATATGGATAGATCGATGCAGCCTTCGTGATTACGACGATGGGCTTATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCGCAGCATGACAAGACCATGCTGATCGGAGCTGATCCATCACATGTTGGTGATAGGTGCATCCGGGTAACAATTCATCATTGTTTCTTCGATGGAACACGGCAAAGACAACCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAATTGGGCTATATATGCTATTTGTGCTAGCGTCGAATCTCAGATATACTCCCAGTGCAACATATACGAAGCAGGAGCTAAGAAGAAGACTTTTGAATTTTATACCGAGAAGGCGGCAGATAAGGAAGTGGCGAGGTCTGGCACTATTGTATCTGAAGGAGACATGCTTCTGAATGGTGCTCAACCATGCTTACTAACACGAAACAATGAAGAAGCAATGTTCCATCCAAGTGAATACTATCCAACATGGACAATGGAATCAGCTGACCACTCTCTCAGAGAGATCCTCCAGTTGTGTTCAGGTTGGCAATCCATTGCTAGGCCAAAAGATAATCTGGTTCCCAATTAA 999 0.4585 MVSVLPYADVDSSLRALAGSAEGFGRHAIGGLHGSLYIVTTLSDDGPGSLRQGCREKEPLWIVFGVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWAIYAICASVESQIYSQCNIYEAGAKKKTFEFYTEKAADKEVARSGTIVSEGDMLLNGAQPCLLTRNNEEAMFHPSEYYPTWTMESADHSLREILQLCSGWQSIARPKDNLVPN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3795 332 PANTHER PECTATE LYASE 3 326 - -
Amo19g3795 332 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Amo19g3795 332 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Amo19g3795 332 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Amo19g3795 332 Pfam Pectate lyase 76 238 IPR002022 -
Amo19g3795 332 Gene3D - 7 314 IPR012334 -
Amo19g3795 332 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Amo19g3795 332 SMART amb_all 47 245 IPR002022 -
Amo19g3795 332 SUPERFAMILY Pectin lyase-like 18 280 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3795 Amo-Chr19 153679120 153681483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3795 44 332 Polysaccharide Lyase AT3G55140 81.661 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3795 K01728 - gmx:100802068 613.224