Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3782 GTCCCCCCAAGTCCCAGTGTCCCACTCATCTCCTCTCCTCTCTCAAAATTGAAAGAACAAAGAAAAGCACGCAGCCGTCGTAGCCACCGTAGCCACCGCAGCCCCGCACCTCTGTTCAAGCGCTCTCTCTGTTTTCGCCGTGTCGCGCCGTCACTCCCCTTCCTCTTCGCCGCCGAGCTTAAAGGTTTTGAGAACAAGCGAAGAGGTGAACTGAAAGTAATAAAAGTTTTCCAGGCGGAGCTATTTGACAAGTTTCTCCACGGCCCAACCTTAGATGAATGCTATTCAGCTATTGCTGTTGGGGCAGGCTTGATCTTCTTGATGTCGTGTTCAAGAGATGATGGCCACGAAGGAAGTAAGACTGAAACATTAGCTACGGAGTTCCATCTGTTCGAGGCACGTAACATAGCAATGAATATTTTCTCCCTTATTAGCCACGTGTCGTTAAGTGGTTGGCCTGTGACACCGCCTAACAACAAAAAGAACAATAGAAATAACCTCAGCTCCACCACCTTCACCGTCAGAAGAAACGGGAAATTTAACGATGAGAAACTTTTTCCGATTAGCAGCACGGGCACGACATCCCCTCCGAACGCCCAAATCCGCGGCGGAGAACAGTGTCGTTTCCATCATCCACCCCGTGCGCACAACGGCGTCGTTTCACCGCCACTACCACAATGCTTTTTATTCCTCCGCCTCTCCACTACCATCACTCAAATCTTCCCCCTTCTTGGGATTCGGAGGAGGAACATGTTCATCCAAACGCAGCCTACACCGAATCCTTCGTCTCTGATGTTCTATGCCGGGAAGCCTGTCATGGAAGTTGGAAGTGCCGACTTCCCAAACGCGCGTTCGGCTATGAATTCGCCTCTCGCTAAATCAATCTTTGGAATTGATGGGATTACTAGGGTTTTCTTCGGGTCTGATTTTGTTACCGTGACGAAATCTGATGATTCTTCTTGGGAGTTGTTGAAGCCTGAGATATTTGCGGCCATTATGGATTTCTATTCCTCTGGTCAGCCGTTGTTTTTGGACTCTAAAGCTGCTGCAGCCATGGATACAGCTATTCAAGAGGATGATTCCGAAACTGTTGCAATGATCAAGGAATTGTTGGAGACTCGTATTCGGCCGGCTGTTCAAGATGATGGTGGAGACATTGAATATCGAGGATTTGATCCGGATACTGGAATAGTAAAACTTAAGATGCAAGGAGCATGTAGTGGGTGCCCAAGTTCTTCGGTGACTTTGAAATCCGGCATTGAAAATATGTTGATGCATTATGTACCTGAGGTCAAAGGAGTTGAACAAGAACTGGATGCTGAAGATGAAGCAGAAGCATTAAGTGGACAAATGGAGTAG 1359 0.4783 VPPSPSVPLISSPLSKLKEQRKARSRRSHRSHRSPAPLFKRSLCFRRVAPSLPFLFAAELKGFENKRRGELKVIKVFQAELFDKFLHGPTLDECYSAIAVGAGLIFLMSCSRDDGHEGSKTETLATEFHLFEARNIAMNIFSLISHVSLSGWPVTPPNNKKNNRNNLSSTTFTVRRNGKFNDEKLFPISSTGTTSPPNAQIRGGEQCRFHHPPRAHNGVVSPPLPQCFLFLRLSTTITQIFPLLGIRRRNMFIQTQPTPNPSSLMFYAGKPVMEVGSADFPNARSAMNSPLAKSIFGIDGITRVFFGSDFVTVTKSDDSSWELLKPEIFAAIMDFYSSGQPLFLDSKAAAAMDTAIQEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDAEDEAEALSGQME* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3782 452 PANTHER NIFU-LIKE PROTEIN 5, MITOCHONDRIAL 244 452 - -
Amo19g3782 452 Gene3D - 361 436 IPR034904 -
Amo19g3782 452 Gene3D - 55 106 IPR042087 -
Amo19g3782 452 SMART Nfu_N_3a 253 339 IPR014824 -
Amo19g3782 452 Pfam NifU-like domain 367 435 IPR001075 GO:0005506|GO:0016226|GO:0051536
Amo19g3782 452 SUPERFAMILY Hypothetical protein SAV1430 251 341 IPR036498 -
Amo19g3782 452 Pfam Scaffold protein Nfu/NifU N terminal 253 339 IPR014824 -
Amo19g3782 452 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 353 439 IPR034904 -
Amo19g3782 452 MobiDBLite consensus disorder prediction 20 34 - -
Amo19g3782 452 Gene3D - 245 345 IPR036498 -
Amo19g3782 452 MobiDBLite consensus disorder prediction 1 34 - -
Amo19g3782 452 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 244 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3782 Amo-Chr19 153552846 153556635 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3782 58 103 Core DNA Replication Machinery Family AT2G27120 82.609 6.00e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3782 K22074 - tcc:18586745 372.474