Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3780 ATGCCATTTCGAGCTCGCACTGCAATCTTCCGTTGGTCTCTGCATACTGTTCCTTACCGTATCCATCACCATCAACCTCATTCTATTCACTCTTCTTCTTCTTCCATTCCCCACAAGTTCACTTCTTTAGCCCAAACTCAGGTTTATGGCGAATCTGTTGAAACAAGTGACGATGATGGATTTTTGTCATGGTTGGAGCGGAAAGCTGGTTGTAGAATTTCTTCATCGCTTTCAATTGGTAAATCTTCATATGGCAGGTCTCTGTTTGCTTCTAAGGCGATAAAAACCGGAGATTGTATTTTGAAGGTTCCTTATAGAGTGCAAATAACAGCAGATAATCTCCCTGCTAAGATCAAATCTCTGATCAGTGAGGAAGTTGCGAATGTTGCAAAACTTGCTGTTCTTCTTCTAATTGAGCGGAAATTGGGTCAGGACTCCCAGTGGAATCCTTATATCTGCCGTCTACCATGGCAAGAGGAGTTGCATAACACGATTTTTTGGAATGAAAGTGAGCTGGAGATGATTCATCGAAGCTCGGTTTATTGGGAAACAATTAACCAAAAGTCTCAAATTGAAAGGGACTTCTTGGCAATCAGACCTATTTTTGAATGTTTCAGTCAAAGTTTTGGAGATATTACTTATAAAGACTTCATGTATGCATGCACACTAGTTGGTTCTCGAGCATGGGGAAGCACCAATGGTTTATCTCTGATTCCTTTTGCAGATTTTGTAAACCATGATGGGAATTCAGAAGCAATTGTGATGAGTGATGATGACAAACAATTATCAGAAGTTATCTCTGATCGTGACTATGCGCCTGGGGAGCAGGTACTGATAAGATATGGAAAGTTTTCAAATGCTACATTGATGTTAGACTTCGGTTTTACAGTCCCCTACAACATTTATGACCAGGTTCAGATCCAGTTAGATATACCTAAGCATGATCCTCTGCACAAGATGAAGTTGGAACTCATGCAACAATACTTCGTGCCTTCAAGGAAAAACGCGGAAAACTTGAAACATTCTTGGAACATCTTCACAATCAATATTTGGATATCTGATGGAGCTATGATCATCACTTAG 1083 0.4017 MPFRARTAIFRWSLHTVPYRIHHHQPHSIHSSSSSIPHKFTSLAQTQVYGESVETSDDDGFLSWLERKAGCRISSSLSIGKSSYGRSLFASKAIKTGDCILKVPYRVQITADNLPAKIKSLISEEVANVAKLAVLLLIERKLGQDSQWNPYICRLPWQEELHNTIFWNESELEMIHRSSVYWETINQKSQIERDFLAIRPIFECFSQSFGDITYKDFMYACTLVGSRAWGSTNGLSLIPFADFVNHDGNSEAIVMSDDDKQLSEVISDRDYAPGEQVLIRYGKFSNATLMLDFGFTVPYNIYDQVQIQLDIPKHDPLHKMKLELMQQYFVPSRKNAENLKHSWNIFTINIWISDGAMIIT* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3780 360 ProSiteProfiles SET domain profile. 69 282 IPR001214 GO:0005515
Amo19g3780 360 Gene3D - 298 347 IPR036464 -
Amo19g3780 360 Gene3D set domain protein methyltransferase, domain 1 57 296 - -
Amo19g3780 360 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 51 345 - -
Amo19g3780 360 PANTHER OS01G0976450 PROTEIN 51 345 - -
Amo19g3780 360 SUPERFAMILY SET domain 59 300 IPR046341 -
Amo19g3780 360 Pfam SET domain 85 282 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3780 Amo-Chr19 153498384 153504740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3780 60 275 NAC Transcription Factor Family AT3G56570 24.554 8.95e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo19g3780 SET 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3780 K19199 - gmx:100818002 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3780 19 153498384 153504740 Amo19g3780 19 153498384 153504740 ECH