Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3777 GTCCCCCCAAGTCCCAGTGTCCCACTCATCTCCTCTCCTCTCTCAAAATTGAAAGAACAAAGAAAAGCACGCAGCCGTCGTAGCCACCGTAGCCACCGCAGCCCCGCACCTCTGTTCAAGCGCTCTCTCTGTTTTCGCCGTGTCGCGCCGTCACTCCCCTTCCTCTTCGCCGCCGAGCTTAAAGGTTTTGAGAACAAGCGAAGAGGTGAACTGAAAGTAATAAAAGTTTTCCAGGCGGAGCTATTTGACAAGTTTCTCCACGGCCCAACCTTAGATGAATGCTATTCAGCTATTGCTGTTGGGGCAGGCTTGATCTTCTTGATGTCGTGTTCAAGAGATGATGGCCACGAAGGAAGTAAGACTGAAACATTAGCTACGGAGTTCCATCTGTTCGAGGCACGTAACATAGCAATGAATATTTTCTCCCTTATTAGCCACGTGTCGTTAAGTGGTTGGCCTGTGACACCGCCTAACAACAAAAAGAACAATAGAAATAACCTCAGCTCCACCACCTTCACCGTCAGAAGAAACGGGAAATTTAACGATGAGAAACTTTTTCCGATTAGCAGCACGGGCACGACATCCCCTCCGAACGCCCAAATCCGCGGCGGAGAACAGTGTCGTTTCCATCATCCACCCCGTGCGCACAACGGCGTCGTTTCACCGCCACTACCACAATGCTTTTTATTCCTCCGCCTCTCCACTACCATCACTCAAATCTTCCCCCTTCTTGGGATTCGGAGGAGGAACATGTTCATCCAAACGCAGCCTACACCGAATCCTTCGTCTCTGATGTTCTATGCCGGGAAGCCTGTCATGGAAGTTGGAAGTGCCGACTTCCCAAACGCGCGTTCGGCTATGAATTCGCCTCTCGCTAAATCAATCTTTGGAATTGATGGGATTACTAGGGTTTTCTTCGGGTCTGATTTTGTTACCGTGACGAAATCTGATGATTCTTCTTGGGAGTTGTTGAAGCCTGAGATATTTGCGGCCATTATGGATTTCTATTCCTCTGGTCAGCCGTTGTTTTTGGACTCTAAAGCTGCTGCAGCCATGGATACAGCTATTCAAGAGGATGATTCCGAAACTGTTGCAATGATCAAGGAATTGTTGGAGACTCGTATTCGGCCGGCTGTTCAAGATGATGGTGGAGACATTGAATATCGAGGATTTGATCCGGATACTGGAATAGTAAAACTTAAGATGCAAGGAGCATGTAGTGGGTGCCCAAGTTCTTCGGTGACTTTGAAATCCGGCATTGAAAATATGTTGATGCATTATGTACCTGAGGTAACAAGTTCTGGGATATCTTCTTGTGCTGAAATTAATTCTTGTTTCCTTCTGGGGACTATGCTTGTGCTTAGAAACAAAGTTTGTTCTGCCCTTCCAGTTTTTTTACGTTTTTTTTTTTAA 1413 0.4692 VPPSPSVPLISSPLSKLKEQRKARSRRSHRSHRSPAPLFKRSLCFRRVAPSLPFLFAAELKGFENKRRGELKVIKVFQAELFDKFLHGPTLDECYSAIAVGAGLIFLMSCSRDDGHEGSKTETLATEFHLFEARNIAMNIFSLISHVSLSGWPVTPPNNKKNNRNNLSSTTFTVRRNGKFNDEKLFPISSTGTTSPPNAQIRGGEQCRFHHPPRAHNGVVSPPLPQCFLFLRLSTTITQIFPLLGIRRRNMFIQTQPTPNPSSLMFYAGKPVMEVGSADFPNARSAMNSPLAKSIFGIDGITRVFFGSDFVTVTKSDDSSWELLKPEIFAAIMDFYSSGQPLFLDSKAAAAMDTAIQEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVTSSGISSCAEINSCFLLGTMLVLRNKVCSALPVFLRFFF* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3777 470 Gene3D - 245 345 IPR036498 -
Amo19g3777 470 SUPERFAMILY Hypothetical protein SAV1430 251 341 IPR036498 -
Amo19g3777 470 Gene3D - 361 434 IPR034904 -
Amo19g3777 470 Pfam Scaffold protein Nfu/NifU N terminal 253 339 IPR014824 -
Amo19g3777 470 PANTHER NIFU-LIKE PROTEIN 5, MITOCHONDRIAL 244 432 - -
Amo19g3777 470 SUPERFAMILY Fe-S cluster assembly (FSCA) domain-like 353 432 IPR034904 -
Amo19g3777 470 SMART Nfu_N_3a 253 339 IPR014824 -
Amo19g3777 470 Pfam NifU-like domain 367 432 IPR001075 GO:0005506|GO:0016226|GO:0051536
Amo19g3777 470 Gene3D - 55 106 IPR042087 -
Amo19g3777 470 PANTHER IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATED 244 432 - -
Amo19g3777 470 MobiDBLite consensus disorder prediction 20 34 - -
Amo19g3777 470 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3777 Amo-Chr19 153451269 153454910 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3777 58 103 Core DNA Replication Machinery Family AT2G27120 82.609 7.10e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3777 K22074 - cit:102619913 349.362