Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3721 ATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTACGCCAAGGTTGCAGGTTTTTCTACAAGAGTTTGGAGCACAAATAGGAAGGGAAATGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGAAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACGAATCCGACAACCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATCACTCGGAACAGCTCGCTTATTCAGTTTGTCAAACAATACGATAATTGCCTTGGAAGCATGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTTATACCATGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGAGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCATCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTAGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGATGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGTTTTTCGTTCGCAAAATATTTACGAATTTGCATCCGAATCGGAGGAGCTGACTGCAATTCTGCACCGTGCGTACGATAACGTCATGGCTGAGATGGAATCATTAAAAGCCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAAATTGGAATCCGTTAACAAGCTTCAAAGTCCGCCAAGGATCCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAACCTGTTTGATGCTGCATCAGTGTTGCATTCAAATTCCAGCCAATATCAAGGACATGTAATGAATTATCAGTTTACACATCATGGTGGGATAGATTTCAGGGTGTATATTCAACTTTATTTGGGTGTAAAAAATCGCAGGTTATGGGTGTATATTTGA 1407 0.4193 MTFTTLEDAEKFYRNYAKVAGFSTRVWSTNRKGNEIKNQLITCSREEKWKSKISPTEKTNPTTGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGMRSTQRSESMHSFFNKFITRNSSLIQFVKQYDNCLGSMEQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCHHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLMEPRSKRFDQLVFRSQNIYEFASESEELTAILHRAYDNVMAEMESLKAKRKGTSSLSHEDAKLESVNKLQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLFDAASVLHSNSSQYQGHVMNYQFTHHGGIDFRVYIQLYLGVKNRRLWVYI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3721 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 126 342 IPR031052 GO:0006355
Amo19g3721 468 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 108 IPR031052 GO:0006355
Amo19g3721 468 MobiDBLite consensus disorder prediction 358 393 - -
Amo19g3721 468 ProSiteProfiles Zinc finger SWIM-type profile. 240 276 IPR007527 GO:0008270
Amo19g3721 468 SMART 26again6 251 278 IPR006564 GO:0008270
Amo19g3721 468 PANTHER OS03G0843700 PROTEIN 126 342 - -
Amo19g3721 468 PANTHER OS03G0843700 PROTEIN 1 108 - -
Amo19g3721 468 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
Amo19g3721 468 MobiDBLite consensus disorder prediction 358 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3721 Amo-Chr19 152537229 152539489 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g3721 FAR1 5.2e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3721 - - adu:110280503 584.334