Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3705 ATGATGATGCCAAATAATAACTCTGAAACGTGTTCATCGCCTTCTAATAACAATAAAGAAATAATGGGGAAACGTTTGAGGTACGAAGAGAACGCAGGGTTTCAGAAGTTCAAAGGCGTTGTTCCTCAGCAAAACGGGCATTGGGGAGCACAAATATACGCAAACCACCAGAGAATATGGCTGGGAACATTCAAGACGGAAAGAGAAGCCGCCATGGCTTACGACAGCGCCACCATCAAGCTAAGAAGCGGCGAAAGCCACAGAAACTTCCCGTGGAACGATCAAACCGTTCAGGAGCCTTATTTCCAGAGCTATTACAGCACGGAAACTGTTCTTACCATGATCAGAGACGGTACATATCCCTCCAAATTTACATCGTTTCTTCAAAATCAAAGCCATAAAGAAGAAGCCACAGGAACAATTTATTCCCATAATACGCGCATCAAGATTCGAGGAGGAGAACAGTTTTCTTGCACGCAACTCTTTCAGAAAGAATTAACGCCCAGCGACGTTGGGAAACTGAACAGGCTTGTTATTCCAAAGAAACATGCAGTTACGTATTTGCCCTTTGTTGATGGAAATAACAATAATGCAATGGAAGCAGGGGAATTCGGCGGCGGTGGCGGCGGCGTTGATGTGGAGGTTATGTTTTACGATAAGTTGATGAGATCGTGGAAATTCAGGTACTGCTATTGGAAGAGTAGCCAGAGTTATGTGTTCACGAGAGGGTGGAACCGTTTCGTGAAGGACAAGAAACTCAAGGCTAAAGACGTCATTGCATTTTACATGTGCGAGCCTGTGAATAATGAAGTTCATCAGCACCGTCTGTTTGGGTTGATCGATGTAATTTATAATAATACGGAAAATGTTGAGACCACAAAACGAGAGGTAATTGGGAAGAGTACTACTAGGTTAGCTTGCAGTGAAGTAGTTGTAGAAGATATGGAAGAAGAAGATGAAGACAGAGAAGAAGAAGAAGAACATAAAGTAGTAGGGAGCAATAATAATAATAATAATGTTGATGGAATGGAGTTGAATCCACCACACAAAGGTGTGAAGCTATTTGGCGTATCTATCAACTGA 1083 0.4247 MMMPNNNSETCSSPSNNNKEIMGKRLRYEENAGFQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKTEREAAMAYDSATIKLRSGESHRNFPWNDQTVQEPYFQSYYSTETVLTMIRDGTYPSKFTSFLQNQSHKEEATGTIYSHNTRIKIRGGEQFSCTQLFQKELTPSDVGKLNRLVIPKKHAVTYLPFVDGNNNNAMEAGEFGGGGGGVDVEVMFYDKLMRSWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDVIAFYMCEPVNNEVHQHRLFGLIDVIYNNTENVETTKREVIGKSTTRLACSEVVVEDMEEEDEDREEEEEHKVVGSNNNNNNVDGMELNPPHKGVKLFGVSIN* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3705 360 Gene3D AP2/ERF domain 35 92 IPR036955 GO:0003700|GO:0006355
Amo19g3705 360 ProSiteProfiles AP2/ERF domain profile. 36 91 IPR001471 GO:0003700|GO:0006355
Amo19g3705 360 MobiDBLite consensus disorder prediction 315 347 - -
Amo19g3705 360 Pfam AP2 domain 36 82 IPR001471 GO:0003700|GO:0006355
Amo19g3705 360 SMART B3_2 162 283 IPR003340 GO:0003677
Amo19g3705 360 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
Amo19g3705 360 SMART rav1_2 36 97 IPR001471 GO:0003700|GO:0006355
Amo19g3705 360 CDD B3_DNA 161 263 IPR003340 GO:0003677
Amo19g3705 360 SUPERFAMILY DNA-binding pseudobarrel domain 160 275 IPR015300 -
Amo19g3705 360 Gene3D - 157 285 IPR015300 -
Amo19g3705 360 ProSiteProfiles B3 DNA-binding domain profile. 162 277 IPR003340 GO:0003677
Amo19g3705 360 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 7 360 IPR044800 GO:0003700
Amo19g3705 360 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Amo19g3705 360 Pfam B3 DNA binding domain 162 265 IPR003340 GO:0003677
Amo19g3705 360 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 7 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3705 Amo-Chr19 152401477 152402559 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3705 32 325 RAV Transcription Factor Family AT1G50680 54.934 2.58e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Amo19g3705 B3 2.5e-24 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3705 K09287 - qsu:111998385 357.451