Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3688 ATGGAGGGGTTTTGGAGCATGTTCTGTGGGGAAGAAACATGCAGCTATGATTTCAAGTTTTTGATTGATCCTTCCTCATGCATCAACCACTTCTTGATATCTTGCTTTGATGTGTTGCTTCTTCTCATGCTCCTATTCATTATGATCAAGAAGTTACCATCCAAACCGTTACATGGTCTAACAGGGTCACGAAGACTTTCAAAATTGCATCTAGTCTCTGCCATAGCCAATGGTGCTCTTGGCCTGGTGCATTTGTGCTTAGGCATTTGGGTTTTAGTGGAGAATTTGAGGAAAACCAACACTTCTTTGCCTCTTGATCTGTGGTTGCTAGAATTCTTTCAAGGATTGACATGGTTGTCAGTCAGCATAGCAATAAATCTTGGCCTAAAACAGCTTCCAAGACCATGGTTAAGGATGTTCTCTGTTCTTATCTTTTTGGTTTCTGGCATTTCCTGTGCTTTTTCCTTGTTTTATGTAATTGGTAGCAAAGACCTGTCCCTTAAGGTAGCTTTAGATATTCTATCTTTCCCAGGGGCAATATTATTGTTGCTTTGCACATATAAATGCAGGGAAACTGACATGGAACTTGATGAAAGCCTTTACACTCCTTTGAATGGTGAGTCCAACAAAATTGGTTCTATCAACAACGATGCTCTATATGGAAGAGCTGGATTCTTTAGTACCATGTCATTTTGGTGGATGAATCCTTTGATGAAGAGGGGTAAAGAGAAAACACTTCAGGAAGAAGATATCCCAAAGTTGCGAGAGCAAGATCAAGCAGAAAGTTGTTACTTGCTGTTTCTAGACCAATTGAACAGGAAGAAACAGAATGATCCCTCTTTGCAATCATCGATTTTGTGGACTATAGTTTTATGTCACCGGAGAGAAATTCTGATATCAGGATTCTTTGCATTGCTTAAGGTGATTGCTATTTCCGTTGGTCCACTGCTTCTGAATTCCTTCATACTGGTAGCTGAGGGCAATGAAAGCTTCAAATATGAAGGTTTTGTATTGGCCATATCACTTTTCTTTACGAAGGTCATAGAATCTTTATCACAAAGGCAGTGGTACTTCCGAGCCAGACTGATAGGTGTGAAAGTTAAATCTCTGCTCACTGCAGCCATTTATAAAAAACAACTGAGGTTATCAAATTCTGCAAGATTGAATCATTCTGGTGGTGAGATCATGAACTATGTGACTGTGGATGCTTATAGAATCGGAGAATTTCCTTATTGGTTTCACCAGACATGGACGACTAGCGTCCAGCTATGCATCTCCTTGGTAATACTTTTTCGCGCCGTCGGGCTAGCTACAATTGCCTCCTTGGTGGTGATAGTTTTCACTGTGCTTTGCAATACTCCACTTGCAAAGTTGCAGCATAAGTTTCAAAGCAAACTCATGGTGGCACAAGATGAGAGGTTGAAGGCTACTTCTGAGGCTCTTCTGAATATGAAGGTGCTGAAATTGTATGCATGGGAAACCAACTTCAAGGATTCTATTGAAAGATTAAGGAACGTGGAGCTGAAATGGTTGTCTGCAGTGCTATTGCGCAAGGCCTACAACACCTTTCTCTTTTGGTCCTCACCTGTGTTGGTATCCGCTGCTTCCTTTGGAGCTTGTTACTTTCTTAACGTTCCCCTGCATGCTAACAATGTCTTCACCTTTGTGGCAACTTTGCGCCTTGTTCAAGATCCAATTAGAATCATTCCTGATGTCATTGGGGTGGTCATTCAGGCCAGAGTTGCGTTTGCCCGGCTTGTAAAGTTCCTTGAGGCATCTGAACTGCAAAATGCAAATGTCAAGAAGAAGAGTTTCAGCGACAACATGAGGGGCTCCATTTCAATCAAGGCTGCTGACTTTTCATGGGAAGATAATGCATCAAAACCGACACTGCGAAATATCAACTTAGAGGTTAGGCCAGGGAAAAAGTTGGCTATTTGTGGAGAGGTTGGATCAGGAAAATCAACACTGTTAGCAGCAATTCTCAGAGAAGTTCCTAATACTCAGGGAACTATTGAAGTTTATGGCAAATTTGCCTATGTTTCTCAAACAGCATGGATACAGACAGGTACAATAAGGGATAACATATTGTTTGGATCAGCAATGGATACTCAAAAATATAGAGAAACTCTGCATAGGTCTTCACTAATAAAGGACCTTGAGTTGTTTCCCCATGGTGATCTCACTGAGATAGGGGAGAGAGGGGTTAACCTGAGTGGAGGCCAGAAGCAACGGATTCAGCTCGCTCGTGCTCTTTACCAGAATGCTGATATATACCTCTTGGATGATCCATTCAGTGCTGTTGATGCACATACTGCCACAAATCTGTTTAATGAATACATCATGCAAGGACTTGCAGGAAAGACAGTTTTGCTTGTCACTCATCAAGTTGACTTTCTTCCTGCATTTGATTCTGTTTTGTTGATGTCAGATGGTGAAATCCTACAAGCTGCTCCTTATCATGATCTTTTGGCCTCAAGTCAAGAATTTCAGGACCTTGTCAGTGCTCACAAAGAGACTGCTGGTTCTGACCGGCTTATGGATGTTACTTCTTCCCAGAGAAATTCTAATTCTGCAGTAGAGATTAGGAAAACTTATGTGGAGAAGCAGTTTGATGCATCAAAAGGAGATCAGCTAATCAAGGAAGAAGAGAGAGAGAAAGGAAACCAAGGCTTCCGGCCTTACTTACAGTATCTGAATCAGAACAAAGGATATGTGTACTTCTCTGTGGCTGTCATTTCTCAGATTACATTTGTGATTGGTCAGATATCGCAAAACTCATGGATGGCTGCCAATGTTGACAATCCTCATGTCAGCACTTTGAAATTGATTTTAGTGTACTTGTTGATTGGATTTACTTCAACATTATTCTTGTTGGTGAGAAGTCTTCTTACAGTTGCTATGGGACTTCAGTCATCAAAATCATTATTTCTACAGCTTCTGAATTCTCTCTTTCGCGCACCAATGGCATTTTATGACTCCACCCCCTTGGGACGGATACTTAGCAGGGTTTCTGGGGATCTCAGCATTGTTGATCTTGATGTCCCATTTGGCCTTCTTTTTGCTGTTGCAGCTACTTCTAACTGTTATGCTAATCTTACAGTCTTAGCAGTTGTTACTTGGCAAGTCTTGTTTGTCTCTATACCGATGATTATTTTTGCAATTCGCTTGCAGAGATATTACTTTGCTACTGCGAAAGAATTGATGCGGCTCAATGGCACAACAAAATCCTATGTAGCTAATCATCTAGCTGAATCTGTAGCTGGAGCTGTGACAATAAGGGCTTTTGAGGAGGAAGATCGTTTTTTTGCAAAAAATCTTCATTTGATTGATGTCAATGCTAGTCCTTTTTTCCATACTTTTGCAGCAAATGAGTGGTTCATTCAGCGGTTGGAAACAGTCAGTGCAGTTGTTCTTGCATCTGCAGCACTTTGCATGGTTGTACTTCCCTCTGGAACTTTCACATCTGGTTTTATTGGCATGGCTCTCTCATATGGCCTTTCACTTAATGCTTCACTAGTATTTTCAATTCAAAATCAGTGCAACATAGAAAATTACATAATATCAGTGGAGAGGCTTAATCAATATATGCATATACCAAGTGAGGCTCCAGAAATTATAGAAGGAAATCGTCCTCCAACAAATTGGCCACTTGAGGGAAAAGTGGAAATTCATGATTTGCAGATTCGATATAGACCTGATGCGCCTCTTGTACTCCGTGGAATCACATGCACATTTGAAGGAGGACACAAGATTGGTATTGTTGGCAGGACAGGTAGTGGAAAGTCGACACTAATAGGCGCTTTATTCCGGCTTGTGGAGCCGGCCGGTGGAGAGATCATAGTTGATGGCATTAATATTTGTTCCATTGGACTTCATGATTTGAGGTCACGTTTTGGTATCATACCTCAGGATCCTACTCTTTTCAATGGAACAGTCAGATACAATATGGACCCCTTATCGCAATACACTGATCAAGAGATTTGGGAGGTTCTTGCGAAGTGTCAATTGCGAGAGGCTGTCCAAGAGAAAGAAGAGGGATTAGATTCCTCAGTTGTTGAAGCCGGAGCGAACTGGAGTATGGGACAAAGGCAGTTGTTTTGTCTGGGGCGCGCACTTCTAAGGAGAAGTCAGATATTAGTGCTGGATGAAGCAACTGCATCAATTGACAATGCAACTGATTTGATTCTGCAGAAAACCATTAGGACTGAATTTGCAGATTGTACTGTAATCACAGTAGCTCACAGGATACCAACTGTGATGGATTGCACCAAGGTTCTTGCCATCAGTGATGGAAAACTGGTAGAGTATGATGAGCCAATGAACTTGATGAAGAGGGAAGGATCACTTTTTGGGCAGCTTGTTAAGGAATATTGGTCTCATTTTCAGTCAGCAGAATCACATTGA 4407 0.4146 MEGFWSMFCGEETCSYDFKFLIDPSSCINHFLISCFDVLLLLMLLFIMIKKLPSKPLHGLTGSRRLSKLHLVSAIANGALGLVHLCLGIWVLVENLRKTNTSLPLDLWLLEFFQGLTWLSVSIAINLGLKQLPRPWLRMFSVLIFLVSGISCAFSLFYVIGSKDLSLKVALDILSFPGAILLLLCTYKCRETDMELDESLYTPLNGESNKIGSINNDALYGRAGFFSTMSFWWMNPLMKRGKEKTLQEEDIPKLREQDQAESCYLLFLDQLNRKKQNDPSLQSSILWTIVLCHRREILISGFFALLKVIAISVGPLLLNSFILVAEGNESFKYEGFVLAISLFFTKVIESLSQRQWYFRARLIGVKVKSLLTAAIYKKQLRLSNSARLNHSGGEIMNYVTVDAYRIGEFPYWFHQTWTTSVQLCISLVILFRAVGLATIASLVVIVFTVLCNTPLAKLQHKFQSKLMVAQDERLKATSEALLNMKVLKLYAWETNFKDSIERLRNVELKWLSAVLLRKAYNTFLFWSSPVLVSAASFGACYFLNVPLHANNVFTFVATLRLVQDPIRIIPDVIGVVIQARVAFARLVKFLEASELQNANVKKKSFSDNMRGSISIKAADFSWEDNASKPTLRNINLEVRPGKKLAICGEVGSGKSTLLAAILREVPNTQGTIEVYGKFAYVSQTAWIQTGTIRDNILFGSAMDTQKYRETLHRSSLIKDLELFPHGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTATNLFNEYIMQGLAGKTVLLVTHQVDFLPAFDSVLLMSDGEILQAAPYHDLLASSQEFQDLVSAHKETAGSDRLMDVTSSQRNSNSAVEIRKTYVEKQFDASKGDQLIKEEEREKGNQGFRPYLQYLNQNKGYVYFSVAVISQITFVIGQISQNSWMAANVDNPHVSTLKLILVYLLIGFTSTLFLLVRSLLTVAMGLQSSKSLFLQLLNSLFRAPMAFYDSTPLGRILSRVSGDLSIVDLDVPFGLLFAVAATSNCYANLTVLAVVTWQVLFVSIPMIIFAIRLQRYYFATAKELMRLNGTTKSYVANHLAESVAGAVTIRAFEEEDRFFAKNLHLIDVNASPFFHTFAANEWFIQRLETVSAVVLASAALCMVVLPSGTFTSGFIGMALSYGLSLNASLVFSIQNQCNIENYIISVERLNQYMHIPSEAPEIIEGNRPPTNWPLEGKVEIHDLQIRYRPDAPLVLRGITCTFEGGHKIGIVGRTGSGKSTLIGALFRLVEPAGGEIIVDGINICSIGLHDLRSRFGIIPQDPTLFNGTVRYNMDPLSQYTDQEIWEVLAKCQLREAVQEKEEGLDSSVVEAGANWSMGQRQLFCLGRALLRRSQILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTKVLAISDGKLVEYDEPMNLMKREGSLFGQLVKEYWSHFQSAESH* 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3688 1468 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 66 1468 - -
Amo19g3688 1468 Pfam ABC transporter transmembrane region 298 563 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g3688 1468 Pfam ABC transporter transmembrane region 907 1165 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g3688 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1212 1449 IPR027417 -
Amo19g3688 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 615 836 IPR003439 GO:0005524
Amo19g3688 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 908 1185 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo19g3688 1468 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 66 1468 - -
Amo19g3688 1468 Pfam ABC transporter 1239 1387 IPR003439 GO:0005524
Amo19g3688 1468 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 835 IPR027417 -
Amo19g3688 1468 ProSitePatterns ABC transporters family signature. 738 752 IPR017871 GO:0005524
Amo19g3688 1468 CDD ABC_6TM_ABCC_D2 904 1197 IPR044726 GO:0140359
Amo19g3688 1468 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1222 1456 IPR003439 GO:0005524
Amo19g3688 1468 SUPERFAMILY ABC transporter transmembrane region 286 586 IPR036640 GO:0005524|GO:0016021
Amo19g3688 1468 CDD ABC_6TM_ABCC_D1 299 586 IPR044746 GO:0140359
Amo19g3688 1468 SMART AAA_5 640 813 IPR003593 -
Amo19g3688 1468 SMART AAA_5 1248 1440 IPR003593 -
Amo19g3688 1468 Gene3D - 1206 1457 IPR027417 -
Amo19g3688 1468 SUPERFAMILY ABC transporter transmembrane region 908 1202 IPR036640 GO:0005524|GO:0016021
Amo19g3688 1468 Pfam ABC transporter 631 765 IPR003439 GO:0005524
Amo19g3688 1468 CDD ABCC_MRP_domain1 613 813 - -
Amo19g3688 1468 Gene3D - 608 842 IPR027417 -
Amo19g3688 1468 Gene3D ABC transporter type 1, transmembrane domain 269 594 IPR036640 GO:0005524|GO:0016021
Amo19g3688 1468 Gene3D ABC transporter type 1, transmembrane domain 870 1203 IPR036640 GO:0005524|GO:0016021
Amo19g3688 1468 CDD ABCC_MRP_domain2 1220 1440 - -
Amo19g3688 1468 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 298 578 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3688 Amo-Chr19 152219669 152226692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3688 564 824 Calmodulin-binding Proteins AT2G36910 29.964 7.80e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3688 K05666 - gmx:100811468 2454.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3688 19 152219669 152226692 Amo19g3617 19 151114985 151121828 PCT
Amo19g3617 19 151114985 151121828 Amo19g3688 19 152219669 152226692 PCT