Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3655 ATGCTTCTGTCTAGCTGCTCTTCAGGCTGTAAATGTGGGGTTTCCTGTCTTAACAAACCATTCCAGCATCGACCCATCAAAAAGATGAAATTAGTTCAGACTGAGAAATGTGGTTCTGGAATTGTGGCGGATGAAGATATCAAGCAAGGAGAATTTGTGATAGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGATTATGGAACATGAAACTTCGTGGGGTGACAAACTTCTACCTATGTGAAATAAATCGAGATATGGTGATCGATGCAACATATAAAGGAAACAAATCAAGATATATKAATCATAGTTGCTGTCCTAATACTGAGATGCAGAAATGGATAATTGACGGTGAAACGAGAATTGGCATATTCGCAACGCGCGACATAAGGAAAGGCGAACATCTGACATATGATTATCAGTTTGTCCAGTTTGGTGCGGATCAGGATTGCCACTGCGGGGCTAATATGTGCAGGCGTAAGCTTGGTGTGAAACCTACCAAGCCTAAAACTTCTTCAGATGCTGCATTAAATTTATTCGGAGACCAGGTTTATCAGAATGGAGGTTTGCATATTGGAAATTCCCGCCTCTTTTGCCAATCAAACTGCCTTCGCAATTGCATTGGTGAAGTTGTTAGAATCAGACACCTTGATATTATAAGGTTCGGGATTATTAAGCGGTTTCATGAATATTCGAAGAAACACTCGATCATGTTTGAGGATGGACATGTTGAATTTTTTGACATGTCCAAGGAAGATTGGGAACTGGTTACATTGTGA 789 0.398 MLLSSCSSGCKCGVSCLNKPFQHRPIKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWNMKLRGVTNFYLCEINRDMVIDATYKGNKSRYXNHSCCPNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGANMCRRKLGVKPTKPKTSSDAALNLFGDQVYQNGGLHIGNSRLFCQSNCLRNCIGEVVRIRHLDIIRFGIIKRFHEYSKKHSIMFEDGHVEFFDMSKEDWELVTL* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3655 262 PANTHER SET DOMAIN PROTEINS 1 260 - -
Amo19g3655 262 ProSiteProfiles AWS domain profile. 1 25 IPR006560 GO:0005634|GO:0018024
Amo19g3655 262 Gene3D SET domain 1 181 IPR046341 -
Amo19g3655 262 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 5 221 IPR025787 -
Amo19g3655 262 SMART set_7 27 150 IPR001214 GO:0005515
Amo19g3655 262 CDD SET_ASHR3-like 28 166 - -
Amo19g3655 262 ProSiteProfiles SET domain profile. 27 144 IPR001214 GO:0005515
Amo19g3655 262 Pfam SET domain 38 143 IPR001214 GO:0005515
Amo19g3655 262 SUPERFAMILY SET domain 3 162 IPR046341 -
Amo19g3655 262 ProSiteProfiles Post-SET domain profile. 150 166 IPR003616 -
Amo19g3655 262 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 1 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3655 Amo-Chr19 151608429 151612448 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3655 6 162 C2H2 Transcription Factor Family AT2G23740 34.463 4.30e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo19g3655 SET 1.7e-19 No_clan