Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3631 ATGTACCAACCTTCCTCTTCCTCCTCCTCTTCTTCTCAGGCACACAACTCAACCGTTTCTGAACCCGCTTTGACCCGCTACGGTTCAGCCCCTGGCTCTCTCCTCCGCACAGCCGTCGATGCCGTCATAGCCGGAGGGGCCGGAGGCCCCCGACATCCTCATCCTCTCATGCCTACGGGATCCCACTACTTCTCCGGGGAGTCCTCCGAGTCCACCTCCAAAGTCAACGACAATTCCAAAGATCATAACCTTCACAGATCGTACGGACTTCAGCAGGACGCCTTCGCCGGATCCTCCTCTTCCTCTTCCTCCTTGCTCCGCCAGAGGAGCTCCCCCGCCGGCTTCCTCTCCAACCTTGCTGACAATGCTGGGGGTGGTGGAGGGGGAGGTGGAGGTGGGTTCACGATCACAAGAGGGGGTGGCGGCAGCGGAGGAGGAAACTACGGCTCTAACAGTGGGAGGTTGAAGTCTCAGATGAGCTTCACCGGGCAAGACTCTCTCTCTCAGATATCAGAGGTAAGCGAGAGCGTTGTGGTGGATGCATCCACTTCTGAGCGTGCTTATGCAATGGACCACTGCTGGGACAACTCTAACTCCAACTCCAGCTCCATTGTCTTCTCCGCCCCGCCCTCCAAACGCTCCAAAAATATTGACGGTGACATCCTCAATTGTCTCACTGCCTTGGACTCTCAGTATAGTCTGCCACAAACTGCTCTTGAAATGGCAACAATGGAGAAGCTAATGCACATTCCTGAAGACTCTGTCCCTTGTAAAATCCGTGCTAAGCGAGGCTGTGCCACTCACCCCCGCAGCATTGCAGAACGGGAGAGAAGAACTAGAATAAGCGGTAAGCTGAAGAAACTGCAGGAACTTGTACCCAATATGGATAAGCAAACAAGCTATGCAGACATGCTAGATTTGGCAGTTCAACATATTAAAGGTCTTCAAACTCAAGTCCAGAAGCTTCACACTGAACTTGACAATTGCACTTGTGGATGCAAACCAAGCTCATAA 1014 0.5316 MYQPSSSSSSSSQAHNSTVSEPALTRYGSAPGSLLRTAVDAVIAGGAGGPRHPHPLMPTGSHYFSGESSESTSKVNDNSKDHNLHRSYGLQQDAFAGSSSSSSSLLRQRSSPAGFLSNLADNAGGGGGGGGGGFTITRGGGGSGGGNYGSNSGRLKSQMSFTGQDSLSQISEVSESVVVDASTSERAYAMDHCWDNSNSNSSSIVFSAPPSKRSKNIDGDILNCLTALDSQYSLPQTALEMATMEKLMHIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHTELDNCTCGCKPSS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3631 337 MobiDBLite consensus disorder prediction 1 24 - -
Amo19g3631 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Amo19g3631 337 MobiDBLite consensus disorder prediction 45 84 - -
Amo19g3631 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 268 328 IPR036638 GO:0046983
Amo19g3631 337 SMART finulus 271 321 IPR011598 GO:0046983
Amo19g3631 337 CDD bHLH_AtbHLH_like 270 322 IPR045239 -
Amo19g3631 337 PANTHER TRANSCRIPTION FACTOR BHLH129 26 330 - -
Amo19g3631 337 Pfam Helix-loop-helix DNA-binding domain 270 316 IPR011598 GO:0046983
Amo19g3631 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 26 330 - -
Amo19g3631 337 MobiDBLite consensus disorder prediction 1 29 - -
Amo19g3631 337 Gene3D - 266 331 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3631 Amo-Chr19 151309018 151313365 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3631 24 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 48.747 2.43e-84 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo19g3631 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3631 - - ahf:112776078 483.796