Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3624 TGGTTTCGCAGTGTGGTGATACTCAGACGGTGGAAATCAATGGCAGCTACATTCACCATCACAACAACAGCGGCAGCAACTCTCTCAAATGTTTCAGGAAACAGGAGCAGAATCAGAGGTTTGAACCCTAACCCTAACCTTAACGCAATCAGCACCAGTTCCAGTTGCAGTGCGATTGCTACTTCATCGAAGCACAGGCTCCTCGGGGGGATTCTTCATCCGCGACTGAATGCGATTCCGCTCGTAAGAACCACGAGGCAAAGGGGTTTTGTGCGGGCGAGTTCGGAGGATGCACCACTACAGTCCAAAGTAACTCACAAGGTGTTCTTCGACATCAGCATTGGAAACCCCGTTGGGAAGCTTGCTGGGAGGATTGTGATTGGACTGTTCGGTGACGATGTTCCTCAAACTGCAGAGAATTTCCGCGCCCTCTGCACTGGAGAGAAGGGTTTTGGATATAAGGGCTCCACCTTCCACCGTGTAATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATACGGGCGCACCTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCTGGAGTTGTGAGCATGGCAAATGCAGGCCCCAACACAAATGGAAGTCAGTTTTTCATTTGCACGGTGAAGACACCATGGCTGGATCAGAGACATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGCTGATTGAGTCGCAGGAGACAGATCGGGGAGACCGTCCAAGAAAGAAGGTTACCATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 822 0.4878 WFRSVVILRRWKSMAATFTITTTAAATLSNVSGNRSRIRGLNPNPNLNAISTSSSCSAIATSSKHRLLGGILHPRLNAIPLVRTTRQRGFVRASSEDAPLQSKVTHKVFFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVTISDSGELPIA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3624 273 MobiDBLite consensus disorder prediction 249 264 - -
Amo19g3624 273 CDD cyclophilin_ABH_like 106 268 - -
Amo19g3624 273 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 153 170 IPR020892 GO:0003755|GO:0006457
Amo19g3624 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 129 144 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 158 170 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 229 244 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 201 216 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 216 228 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 269 IPR002130 GO:0000413|GO:0003755
Amo19g3624 273 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 80 270 - -
Amo19g3624 273 SUPERFAMILY Cyclophilin-like 100 270 IPR029000 -
Amo19g3624 273 Gene3D - 93 272 IPR029000 -
Amo19g3624 273 MobiDBLite consensus disorder prediction 249 273 - -
Amo19g3624 273 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 80 270 - -
Amo19g3624 273 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 122 266 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3624 Amo-Chr19 151221831 151224722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3624 123 264 U-box Gene Family AT5G67530 48.951 7.71e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3624 K03768 - zju:107417611 362.844