Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3580 ATGGAAGGAAATTTGTCACAGGGAGGTTTGATGCAAGGTGGGGCTTCTTTTGGTGGTTTTGATTTGCCCGGTTCGATTCGGGTTCATCACCAGGGACAGCATCCTCATACCATGCATCAACAACATCAAAATCTTCCGCAGCAAGGGTCCTCGGTTCATGAGGGTTTTCCACTTACAATGGGGAACTTACAGGGCTGTGATCAAACCATTTCGCTGACAGACTTTGCTAAGGGAGAAAGAAGCAAAAACTCGGCAAGCGAGGAAGATGAGCCGAGCTTTAATGAAGAAGGTGGTGATGGTCACCATGAAGCTGGTAGAGGGAAAAAGGGATCGCCTTGGCAGCGAGTGAAGTGGACTGATAAGATGGTAAGGCTTCTCATAACAGCTGTTTCTTACATAGGAGAGGATGGAAGTTCGGACGGCGGTGGTGGAGGAAGAAGGAGATTTGCCGTCCTACAGAAGAAAGGTAAGTGGAAGTCTGTTTCTAAGGTCATGGCCGAAAGGGGTTATCATGTTTCTCCTCAGCAGTGTGAGGATAAGTTTAATGATCTTAATAAAAGGTATAAGAAGCTTAATGATATGCTTGGAAGGGGCACTTCTTGTCAGGTTGTTGAGAATCCCACACTTTTGGATGTAATAGATTATCTTTCTGAGAAGGAAAAGGATGATGTTCGGAAAATATTAAGCTCGAAACACCTCTTCTATGAAGAGATGTGTTCTTACCATAATGGTAATAGGCTGCATTTACCCCATGATCCTGCGCTGCAGCGATCACTGCAGTTAGCACTTCGAAATAGGGATGATCATGATAATGATGATTTGAGAAAGTCCCATCATGATGATCATGACGAAGATGATCAAGATGCCGAATTCGATGATCATGATGACTTCGAAGAGAACTATACTTCCCATGGAGATAGTAGAGGAGCATACGGGTCTATGAAGAAATTGAAACAAGGACACTGCCAAGAAGATTCTACTAGTTTTGGTAACTCTTTAAATTGTCAGCACTACAGCAAAAGTTCTTATCCCCATGGACAGATGGTCCAATCCGATGTGAATCAAGGTTTACCCGAAAGCGTGCGAACAGCTTGGTTTCAAAAGCAATGGTTTGAATCTCGCTCGCTTCAGCTTGAGGAACAAAAGCTACAGATACAGGTTGAGATGTTGGAACTAGAGAAACAGAGATTAAAGTGGCAGAGGTTTAGTAAGAAGAAGGACCGGGAGTTGGAGAAACTGAGTCTGGAAAATGAAAGGATGAAGCTTGAGAACGAACGCATCGCTTTAGAACTGAAACGGAAGGAAATCGGCGCTGGCTTTAACTAG 1326 0.4389 MEGNLSQGGLMQGGASFGGFDLPGSIRVHHQGQHPHTMHQQHQNLPQQGSSVHEGFPLTMGNLQGCDQTISLTDFAKGERSKNSASEEDEPSFNEEGGDGHHEAGRGKKGSPWQRVKWTDKMVRLLITAVSYIGEDGSSDGGGGGRRRFAVLQKKGKWKSVSKVMAERGYHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPTLLDVIDYLSEKEKDDVRKILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRNRDDHDNDDLRKSHHDDHDEDDQDAEFDDHDDFEENYTSHGDSRGAYGSMKKLKQGHCQEDSTSFGNSLNCQHYSKSSYPHGQMVQSDVNQGLPESVRTAWFQKQWFESRSLQLEEQKLQIQVEMLELEKQRLKWQRFSKKKDRELEKLSLENERMKLENERIALELKRKEIGAGFN* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3580 441 MobiDBLite consensus disorder prediction 37 60 - -
Amo19g3580 441 MobiDBLite consensus disorder prediction 76 113 - -
Amo19g3580 441 MobiDBLite consensus disorder prediction 80 113 - -
Amo19g3580 441 PANTHER FACTOR, PUTATIVE-RELATED 1 441 - -
Amo19g3580 441 MobiDBLite consensus disorder prediction 16 60 - -
Amo19g3580 441 MobiDBLite consensus disorder prediction 268 284 - -
Amo19g3580 441 MobiDBLite consensus disorder prediction 268 312 - -
Amo19g3580 441 Gene3D - 118 190 - -
Amo19g3580 441 PANTHER F16F4.11 PROTEIN-RELATED 1 441 - -
Amo19g3580 441 Pfam Myb/SANT-like DNA-binding domain 115 241 IPR044822 -
Amo19g3580 441 Coils Coil 403 435 - -
Amo19g3580 441 Coils Coil 373 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3580 Amo-Chr19 150496915 150499718 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo19g3580 Myb_DNA-bind_4 4.5e-24 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3580 - - pvu:PHAVU_007G079600g 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3580 19 150496915 150499718 Amo19g3580 19 150496915 150499718 ECH
Amo19g3580 19 150496915 150499718 Amo19g3580 19 150496915 150499718 PCT