Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3579 ATGCTTGGGGACTCAGCACTATTAGGAGGTGGAGGAAGTAGTGGTGGTGCTTCCGATGATGCAGTGGCGGCAGCAGCAGCGGTGGCAGCATCAGGTGGCGGCGGCGGATCAAATAATTCAGGCGACGATGAAAGAGGGAGGAATATAGAAGAAGGTGGCAGCAGCTTCGGCGGTAACCGGTGGCCGCGGCAAGAGACTTTGGCGCTGTTACGGATACGCTCCGATATGGAAGCTGCCTTTCGAGAGGCAAGTGTTAAGGGTCCTTTGTGGGAACAAGTCTCCAGGAAGATGGCAGAGCTTGGGTATCAGAGAAGTTCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTATAAGTACCATAAGAGAACAAAAGAAGGTCGAACTGGTAAATCAGATGGCAAAACTTACCGCTTCTTTGATCAGTTAGAAGCCCTTGAGAATCAGTCCCAGACAACACTTCTTCATCATCAATCTCCTAAACCAACGCCAATGCCTCCTCCTCCGCCTCCGCCTCCACCTCCCCCACCACCACCACCAACAACAACAACACATGTCACTGTTCCATCAACAACAATTATCCCTTCCTACCAAACAACACCACCACCACAACCAACAAACCCTACTACCTTACTATTCCCTTCTTCATCCACGACCACCATCCCGACCGATCTCCTGTCCAACTCCACCTCTTCCTCCACCTCCTCCGATGAATCAATGGAAGGAAGGCGGAGGAGGAAGCGCAAGTGGAAGGACTTCTTCCACAGGCTAATGACGGAGGTCATCGAGAAGCAGGAGGATCTTCAGAAGAGGTTCCTCGAAGCCGTGGAGAAGCGAGAGCGTGATCGCATGGCCAGGGAGGAATCTTGGAGGCTACAAGAGATGCAAAGGATCAATAGAGAGAGGGAGATTCTCGCCCAGGAACGCTCCATTGCCGCCGCCAAAGACGCCGCCGTCATGTCATTCTTGCAGAAGATAGCCGAACAGCACAATCTAGGACAAGCATTGAATAATACGATCAGCATTGTGCAACCACAGCCACAACCACAACCGCAACCACAATCACAACCAAATGCACCACAGATTCCTCCATCACCGGTGCAACAGCCTACGCCAGTAACGCAGGTTGCTGTTGCACCGGTTGCCGCTCAGCCTGTGGCGCCGTCAGCACCGACGGTACCACAGCAGCAACAAGTAGTGACAAGTATGGAAATCGTGAAAAGTGCTGACAATAACAATGGCGAGAAGTCGATCGGCGGAAGCTCGTCGAGGTGGCCGAAGGTGGAGGTTGAAGCGTTGATACGGCTGAGGACAAGCATGGACGCCAAGTACCAAGAAAACGGGCCAAAGGGGCCGTTATGGGAAGAGATCTCATCATCAATGAAGAAGCTCGGATACAACAGAAACGCTAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAATACTTCAAGAAAGTCAAAGAGAGCAACAAGAAGAGGCCAGAAGATTCCAAGACTTGTCCCTACTTTCACCAGCTGGACGCTCTCTACAGGGAGAAGAACAAGCTGGATATGGCGCCGAAGCCGCAGAGCATGGTGGCGCCGCTGATGGTGAGGCCGGAACAGCAGTGGCCTCCTCAGGCCATGGAAGACGCGGAGAATGACCCCATGGAGCGGCACCAAGACGAGGATGATGAAGATGAGGAGCAGGAGAAGGAGACTGGAGACGAAGAGGATGAAGAGGATGAAGGTGGTGGGAATGGCAATGGCGGTAATAACTATGAGATAGTGGGAAGCAAGGCTGCAACAGCTTCAGCTGAGTAG 1803 0.5236 MLGDSALLGGGGSSGGASDDAVAAAAAVAASGGGGGSNNSGDDERGRNIEEGGSSFGGNRWPRQETLALLRIRSDMEAAFREASVKGPLWEQVSRKMAELGYQRSSKKCKEKFENVYKYHKRTKEGRTGKSDGKTYRFFDQLEALENQSQTTLLHHQSPKPTPMPPPPPPPPPPPPPPPTTTTHVTVPSTTIIPSYQTTPPPQPTNPTTLLFPSSSTTTIPTDLLSNSTSSSTSSDESMEGRRRRKRKWKDFFHRLMTEVIEKQEDLQKRFLEAVEKRERDRMAREESWRLQEMQRINREREILAQERSIAAAKDAAVMSFLQKIAEQHNLGQALNNTISIVQPQPQPQPQPQSQPNAPQIPPSPVQQPTPVTQVAVAPVAAQPVAPSAPTVPQQQQVVTSMEIVKSADNNNGEKSIGGSSSRWPKVEVEALIRLRTSMDAKYQENGPKGPLWEEISSSMKKLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYREKNKLDMAPKPQSMVAPLMVRPEQQWPPQAMEDAENDPMERHQDEDDEDEEQEKETGDEEDEEDEGGGNGNGGNNYEIVGSKAATASAE* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3579 600 MobiDBLite consensus disorder prediction 585 600 - -
Amo19g3579 600 CDD GT1 422 487 - -
Amo19g3579 600 ProSiteProfiles Myb-like domain profile. 59 117 IPR001005 -
Amo19g3579 600 Pfam Myb/SANT-like DNA-binding domain 59 145 IPR044822 -
Amo19g3579 600 Pfam Myb/SANT-like DNA-binding domain 422 509 IPR044822 -
Amo19g3579 600 ProSiteProfiles Myb-like domain profile. 422 480 IPR001005 -
Amo19g3579 600 Gene3D - 61 122 - -
Amo19g3579 600 Gene3D - 424 485 - -
Amo19g3579 600 PANTHER - 1 595 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 342 372 - -
Amo19g3579 600 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 595 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 159 183 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 209 236 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 149 246 - -
Amo19g3579 600 SUPERFAMILY Formin homology 2 domain (FH2 domain) 168 176 - -
Amo19g3579 600 CDD GT1 59 124 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 345 369 - -
Amo19g3579 600 SMART sant 57 119 IPR001005 -
Amo19g3579 600 SMART sant 420 482 IPR001005 -
Amo19g3579 600 MobiDBLite consensus disorder prediction 521 600 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 550 578 - -
Amo19g3579 600 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3579 Amo-Chr19 150463168 150466484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3579 56 537 Trihelix Transcription Factor Family AT1G76880 56.250 1.12e-166 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo19g3579 Myb_DNA-bind_4 7.8e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3579 - - pvy:116120440 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3579 19 150463168 150466484 Amo19g3579 19 150463168 150466484 ECH
Amo19g3579 19 150463168 150466484 Amo19g3579 19 150463168 150466484 PCT