Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3578 ATGCAGCTAGGAGACCCTACTGTGTTGGAAACCTCCACCGGGGCGGCGGCGGAGGGCGGCGCCGAGGCCATTGGGTCGGAAATTAGCATAAAGGAGGGTGGTGGCGATGAGGGTGAGAAGATGAACTTTGGTGGTGGAAATCGGTGGCCCCGGCAAGAAACTTTGGCTCTCTTGAAGATAAGGTCGGATATGGATTCTGTGTTTCGAGATTCAAGTCTCAAGGGTCCACTCTGGGAAGAAGTTTCAAGGAAACTAGGAGAACTTGGATATCATCGAAGCGCAAAGAAGTGTAAAGAGAAATTTGAGAACGTTTACAAGTACCACAAGAGAACGAAAGAGAATCGAAGTGGAAAATCCGAAGGCAAAATCAAAACCTACAAATTCTTTGACCAATTGCAAGCTCTTGAGAATCATCAATTCACTCTTTCATACAACCCTACACCAAAGCCACAACCACCACCCACTTTGCCAACAAACACACTGCCATTATTACCAACAAGGCCTAGTGACGCCACCACCACCACCACCACTGTTCCATCCACAAACCCTACACCACCACCAACCACCACCACAACTGTCGTTACCAACCCTAATCCATCGTCACAAGAAAATAATAATAATATCAATAATACTGATAGTCGTGTGCAACATTCTTTGCCCATAATGAACAACCTTTTCTCTTCTACCTCGACTTCTTCCTCCACGGCCTCTGACGAGGACCTGGAGGAGAAGTACAGGAATAAGAGGAAATGGAAGGAGTACTTCAGGAGGCTGACTAGGCAGGTGTTGGCGAAGCAGGAGGAGATGCAGAAGAGATTCTTGGAAGCCATTGACAAGAGGGAGAGGGAGCAAGTTGCTCAGCAAGATGCATGGAGGATGCAAGAGATGACCAGGATCAATAGAGAGCACGACATTCTCGTTCAAGAACGATCAACCGCCGCCGCAAAAGACGCCGCCGTTATCGCATTCTTGCAAAAGTTATCCGGCCAACAACAAACTCCACCACCACCGCCACCACCACAACCTCCAATCACAGTTTCCTTTGGTGCCAATTTCTTCCAACAACCAACACCGACACCGACACCAACACCAACACCGGTACAAGTACAACCACCACCACATCCACATCCACAACCACAGCCGCAACCGCAACCGCAACCGCAAAAACAATTACAACCTGCAGCATTGACTAACGGTGACAGTCCGGGTCCATTGTCGAGTCCTTCATCATCAAGGTGGCCAAAAGCTGAAGTACATGCTTTGATAAGGCTTCGAACGAGCATGGAACCCAAGTATCAGGAGAATGGACCAAAAGCTCCGTTATGGGAGGACATATCAGCGGGGATGCAGAGGCTAGGGTACAACAGAAGCGCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAAGTGAAAGAGAGCAAGAAGCAAAGGCGAGAAGATAGCAAGACTTGTCCCTATTTTCATGAACTCGATGCTCTATACAGAGAGAAAAGCAAAGGCCAGAACACCAACACTTTCTCCTTTCACATCACGAATAAGACCAATGAGATGATGATGGAGCCGTTGATGGTGCAACCCGAGCAGCAATGGAGGCCTCCCCCTCAGCAGCAGCAGGATAAGGATGTGGATAAGAGTAATAATGCATGCCATGAAGATGATGAATCTAGAAAGAGAGAGAGAGAATATGATCATGAAGAAGAAGAGGAGGATGATGATGATGATGAAGTAGTAGATGACGATGATGATGGTGATGGAGATAGTGTGGAAGATGAAGGAGGTAACCGTTATGAGATTGCGACAAATAAACTTTCTTCAGTGGACGCGGTTGAATGA 1848 0.4756 MQLGDPTVLETSTGAAAEGGAEAIGSEISIKEGGGDEGEKMNFGGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLGELGYHRSAKKCKEKFENVYKYHKRTKENRSGKSEGKIKTYKFFDQLQALENHQFTLSYNPTPKPQPPPTLPTNTLPLLPTRPSDATTTTTTVPSTNPTPPPTTTTTVVTNPNPSSQENNNNINNTDSRVQHSLPIMNNLFSSTSTSSSTASDEDLEEKYRNKRKWKEYFRRLTRQVLAKQEEMQKRFLEAIDKREREQVAQQDAWRMQEMTRINREHDILVQERSTAAAKDAAVIAFLQKLSGQQQTPPPPPPPQPPITVSFGANFFQQPTPTPTPTPTPVQVQPPPHPHPQPQPQPQPQPQKQLQPAALTNGDSPGPLSSPSSSRWPKAEVHALIRLRTSMEPKYQENGPKAPLWEDISAGMQRLGYNRSAKRCKEKWENINKYFKKVKESKKQRREDSKTCPYFHELDALYREKSKGQNTNTFSFHITNKTNEMMMEPLMVQPEQQWRPPPQQQQDKDVDKSNNACHEDDESRKREREYDHEEEEEDDDDDEVVDDDDDGDGDSVEDEGGNRYEIATNKLSSVDAVE* 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3578 615 MobiDBLite consensus disorder prediction 162 179 - -
Amo19g3578 615 CDD GT1 412 476 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 1 47 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 328 415 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 146 161 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 357 388 - -
Amo19g3578 615 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 19 603 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 569 593 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 331 345 - -
Amo19g3578 615 Gene3D - 413 474 - -
Amo19g3578 615 Gene3D - 49 110 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 193 213 - -
Amo19g3578 615 SMART sant 45 107 IPR001005 -
Amo19g3578 615 SMART sant 409 471 IPR001005 -
Amo19g3578 615 ProSiteProfiles Myb-like domain profile. 411 469 IPR001005 -
Amo19g3578 615 MobiDBLite consensus disorder prediction 389 413 - -
Amo19g3578 615 Pfam Myb/SANT-like DNA-binding domain 47 135 IPR044822 -
Amo19g3578 615 Pfam Myb/SANT-like DNA-binding domain 411 498 IPR044822 -
Amo19g3578 615 MobiDBLite consensus disorder prediction 548 568 - -
Amo19g3578 615 CDD GT1 47 112 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 532 615 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 225 244 - -
Amo19g3578 615 PANTHER - 19 603 - -
Amo19g3578 615 MobiDBLite consensus disorder prediction 142 213 - -
Amo19g3578 615 ProSiteProfiles Myb-like domain profile. 47 105 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3578 Amo-Chr19 150428168 150431496 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3578 32 549 Trihelix Transcription Factor Family AT1G76890 46.350 9.54e-135 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Amo19g3578 Myb_DNA-bind_4 4.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3578 - - gsj:114370603 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3578 19 150428168 150431496 Amo19g3578 19 150428168 150431496 PCT