Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3577 CTTTTACTCTCTTATCATTTCGATTACCTGTATGGAACTTTTCAAGTCACTGAGACGCCAACATTACCCTTTAACGGTGACTGTGCCTACACCCGGATCCCGTTTCTTCATCGTGGAACTGTTCAGGTCACTGGCACGCCGACATTACCTTATACGAAGTGTGACGTCAATGGTATAAGGTATCACGGAACTATCTTTTCCTCAACCATATCCGGTAAGGTATACGTGTCTCCATTGAAGTCAACAATTTGTGAAGAAGTATCATACGACACTGCATATGATGATAGTGATCGTTATAATTCTTGCGACGTTAATGTTCCATCGCTTAGTGAAGATGACACACAACATGTGGACAAGGGGAAAAAATCTGTAAACGTTATTCAAGTAGAGGACGATGCAATGGCAGTGAATCATGAGTTATCCGATCACACTGGAATTTCAATAGATGAAATTCCGTACAAAGTTGGCTTCGTGACTAGGATTAGGAATACCAACTTTGACAAGACCAGGAAGGATTCAAAGATACCCATTAACCAATCGTTACACTGTAGTCGTGAAGGTTATCGGGAGTCTCAAGTGAAGGCAGCAACTCGGGTAAAGAGAATAACAACAGCCGGATGCAAAGCAAGGATGTATGTGATGCTTGATAGGCTGAAGGATAATTGGATGGTCTCCAAACTAGAACTGAAGCACACCCACCCGTGTTTTGCCAAGCAACTAATTATTCATGATGACCTTTATGACGAACGTCGAATGTGGGTTCTAATCTATTTTCAAGGTGAATTTTGGGCAGGTATGAGAAGTACTCAACGGAGTGAGAGTATGCACGCCTTTTTCGGTGGTTACTTGTATTGCAAGAGTAGACTGGGTCAATTTAAGGAACTGGAAGATGATGCTGCAGACTCTAAAGGAGTTGTCCCCTGTTCATCGAGTTCTACAATTGAAAGACAATTTCAGCGTGAGTACACAACCTCTAAGTTTAGGGAAGTACAACAGGAATTCAGGAAAAAAAGGGATTGTTTAGTCCGTGGTGCGACTCAAGAGGGTGATTTATTTCGTGTGATCGTGAAAGAGCAATACCTATTATATGGTGAACCTAGGTCCTGGACGAACATTGTCGAGTTTGACCCATCGACACACACGATTCGCAAGAATGTACAGCGCAAACATACTTTCATTAAGAGTAGCCATGACGAGAAGCGATCAGATGAAAGCCACAACTTATTTAGAGGACTGTGTTCGCACTTCTTTAATGTGGCACAGAAATTCGTGACATGTGAAGAAGAGACGACGGCCATGCTACATTCGGATCTTGATGAGTTAAGGTCCAAGTTGTTTGATTATCGTGTGAACTTGGGGTACAGAAGTGTTCCAACTACACAGAACAGCATGGTGACACAGTTTGACCCAGCTTGTGGTGCATCTAGCATTCAAGGTCCCTTAAAGGTCGCAACAAAGGGTCGACCGAGATTGAAGAGGCTTGGATCTGAACTGGACACCTCCATTAAGAGATCTATGCGAAGAAAGAAGAATAATCCACCTCAGGTATGTGTCTACCAGTTCATAGTTTCTAACCACATGTTAATATGCCTTGATGGATAA 1602 0.4263 LLLSYHFDYLYGTFQVTETPTLPFNGDCAYTRIPFLHRGTVQVTGTPTLPYTKCDVNGIRYHGTIFSSTISGKVYVSPLKSTICEEVSYDTAYDDSDRYNSCDVNVPSLSEDDTQHVDKGKKSVNVIQVEDDAMAVNHELSDHTGISIDEIPYKVGFVTRIRNTNFDKTRKDSKIPINQSLHCSREGYRESQVKAATRVKRITTAGCKARMYVMLDRLKDNWMVSKLELKHTHPCFAKQLIIHDDLYDERRMWVLIYFQGEFWAGMRSTQRSESMHAFFGGYLYCKSRLGQFKELEDDAADSKGVVPCSSSSTIERQFQREYTTSKFREVQQEFRKKRDCLVRGATQEGDLFRVIVKEQYLLYGEPRSWTNIVEFDPSTHTIRKNVQRKHTFIKSSHDEKRSDESHNLFRGLCSHFFNVAQKFVTCEEETTAMLHSDLDELRSKLFDYRVNLGYRSVPTTQNSMVTQFDPACGASSIQGPLKVATKGRPRLKRLGSELDTSIKRSMRRKKNNPPQVCVYQFIVSNHMLICLDG* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3577 533 Pfam FAR1 DNA-binding domain 153 236 IPR004330 -
Amo19g3577 533 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 245 360 IPR031052 GO:0006355
Amo19g3577 533 PANTHER OS03G0843700 PROTEIN 245 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3577 Amo-Chr19 150403905 150410203 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo19g3577 FAR1 6.2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3577 - - adu:107470250 401.364