Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3565 ATGTCCTTCCGTAGTATAGTTCGCGATGTAAGGGATGGATTTGGAAGCTTATCAAGGCGGAGTTTTGACTTGAGGCTTTCTGGCCATCACAGGGGCAAGTCTCGTAGCTCTGTCCACGAGTTGCATGATCAGCCTCCGGTTATACAGAACAGCCGGTGGGCTAGTCTTCCACCTGAGCTTCTTCGCGATGTTATTAAGAGGTTGGAAGCTAGTGAGAGTACCTGGCCTGGTCGTAAGCATGTGGTTGCGTGCGCAGCTGTGTGCAAAACCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCTGAATACTGTGGGAAGATTACTTTCCCTGTTTCCCTGAAACAGCCTGGGCATAGGGATGGACCCATCCAGTGTTTCATCAAGAGAGACAAGTCTAAGCTGACATACCATCTCTTCCTTTGCCTTAGTCCTGCTTTGCTTGTTGAAAATGGGAAGTTTCTTCTTGCTGCAAAACGAACCAGAAGGACAACTTGCACAGAGTATATTATATCAATGGATGCAGATAACGTATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTATAACAACGCACAGCTGTCTCCACCGGGCCGGAGCCGCAGGTTTTATTCGAAAAAGGTCTCTCCGAAGCTCCCTAATGGCAGCTACAACATCGCCCAGGTCAACTACGAGTTGAATGTCCTTGGTACTAGGGGCCCAAGAAGGATGCATTGCACCATGTATTCAATCCCCGCATCATGCCTTGAGCCCGGCGGCTCGGTTCCAGGTCAGCCAGAGCTCCTTCCCCCCTCCCTTGAGGATTCTTTCCGGAGTATCTCCTTCTCAAAGTCGATAGGCCATTCAACTGAATTTAGCAGCTCCAGGTTCTCTGACATAATGGGCGCGGGCAATGAGGACGTGGAGGGAAAGGAGAGACCACTAGTCCTTAAGAACAAGCCTCCACGGTGGCATGAACAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACCGTCGCCTCGGTCAAGAATTTCCAGCTGATTGCTGCAAATTCACAACCTGCTGCTCCTCCTCCTCCTGCAGGAACAGGACCACCAACATCTCAGCCGTCGCAGTCTGACCCTGACAAGATCATTCTTCAGTTTGGCAAGGTCGGCAAGGATATGTTCACAATGGACTACCGGTACCCTCTATCAGCATTTCAGGCATTTGCCATATGCTTGACTAGCTTTGATACAAAACTGGCTTGTGAATAG 1296 0.4915 MSFRSIVRDVRDGFGSLSRRSFDLRLSGHHRGKSRSSVHELHDQPPVIQNSRWASLPPELLRDVIKRLEASESTWPGRKHVVACAAVCKTWREMCKEIVSSPEYCGKITFPVSLKQPGHRDGPIQCFIKRDKSKLTYHLFLCLSPALLVENGKFLLAAKRTRRTTCTEYIISMDADNVSRSSSTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFYSKKVSPKLPNGSYNIAQVNYELNVLGTRGPRRMHCTMYSIPASCLEPGGSVPGQPELLPPSLEDSFRSISFSKSIGHSTEFSSSRFSDIMGAGNEDVEGKERPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANSQPAAPPPPAGTGPPTSQPSQSDPDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3565 431 MobiDBLite consensus disorder prediction 365 388 - -
Amo19g3565 431 Gene3D Tubby Protein; Chain A 110 431 IPR025659 -
Amo19g3565 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 431 - -
Amo19g3565 431 PANTHER TUBBY-RELATED 1 431 - -
Amo19g3565 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Amo19g3565 431 Pfam Tub family 114 426 IPR000007 -
Amo19g3565 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Amo19g3565 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Amo19g3565 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Amo19g3565 431 Gene3D - 48 101 - -
Amo19g3565 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Amo19g3565 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Amo19g3565 431 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3565 Amo-Chr19 150149897 150152631 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3565 1 431 TUB Transcription Factor Family AT1G76900 69.717 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Amo19g3565 Tub 9.2e-116 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3565 K19600 - qsu:111992792 760.755