Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3560 ATGATGCATCAACAGCATCATCACGATGATGATGTTTCTGCCTCTGTTCTTTGGGGTGGCCATAAAAGAGGGCGTCAGGAAGAAACTAATATTCAGACTGCTGGTACATCTTCTCATAATCAATTGTTACAACATGTCACTACTCTTCATGCATCACAACCAAGTGCAGGAACAACTTCAAGCGAAAGTGGTACATCCTACGAAGAGACAGGAGAGAGAAAGAGGAAATACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCCGCAGAGATTCGAGACCCTCACAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACTGCGGAAGCTGCCGCAAGAGCTTATGATGAAGCCGCATTGAGGTTTAGAGGAAACAGAGCCAAACTCAACTTCCCTGAAAATGTCAAAGCAGTCCCAGTACCACCACAACAAACAACTGTCCTTCAGGCATCTCCCGTACCAGTTTTTCGGCCGGTGATGCAGGGGCCACGGCCTCCTCTTCAGGTCTCTCCTGAGCAGATGATGAATGACTACTTGCAATATTCTGAGTTATTGAAGAGCTCTGGTGACCACTTTCATGGACAGTGGCTTTACCGTTCACAAATGAATTTGGCAGATCAAACTTCGTTATTATTATCAACGTCTTCGGGTTCGTCTTCGCTTTCATTTTCGTCTTCATTGCCGGCTGAGTTTTCACCGTCTACGAGTCAATCCTCCTCTGCTTCATTTCCTCTGCTGTTTTCTTCAGTTCAACAGCAACCAGGACATCAACCAGGATTTTTCCGTCCACCGAGATATTATTCTGACAATATCAGAGGAGCAAGCGGCGGATTGAGTTTTCCACCACCTTCAACGTGGTCAGATACCCATGGCTATCCTCCTCCGAATTGA 894 0.4664 MMHQQHHHDDDVSASVLWGGHKRGRQEETNIQTAGTSSHNQLLQHVTTLHASQPSAGTTSSESGTSYEETGERKRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVKAVPVPPQQTTVLQASPVPVFRPVMQGPRPPLQVSPEQMMNDYLQYSELLKSSGDHFHGQWLYRSQMNLADQTSLLLSTSSGSSSLSFSSSLPAEFSPSTSQSSSASFPLLFSSVQQQPGHQPGFFRPPRYYSDNIRGASGGLSFPPPSTWSDTHGYPPPN* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3560 297 SMART rav1_2 76 139 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 MobiDBLite consensus disorder prediction 252 297 - -
Amo19g3560 297 MobiDBLite consensus disorder prediction 50 66 - -
Amo19g3560 297 SUPERFAMILY DNA-binding domain 76 134 IPR016177 GO:0003677
Amo19g3560 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 22 257 - -
Amo19g3560 297 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 Gene3D AP2/ERF domain 75 135 IPR036955 GO:0003700|GO:0006355
Amo19g3560 297 CDD AP2 76 135 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 ProSiteProfiles AP2/ERF domain profile. 76 133 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 PANTHER DNA-BINDING DOMAIN 22 257 IPR044808 GO:0003700|GO:0009873
Amo19g3560 297 Pfam AP2 domain 76 125 IPR001471 GO:0003700|GO:0006355
Amo19g3560 297 MobiDBLite consensus disorder prediction 50 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3560 Amo-Chr19 149844816 149846419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3560 24 141 AP2-EREBP Transcription Factor Family AT2G33710 54.622 2.77e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo19g3560 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3560 - - adu:107467893 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3560 19 149844816 149846419 Amo19g3560 19 149844816 149846419 ECH
Amo19g3539 19 149464952 149466679 Amo19g3560 19 149844816 149846419 PCT
Amo19g3560 19 149844816 149846419 Amo19g3539 19 149464952 149466679 PCT