Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3557 ATGGTTCAGTTTGTGATTGGAAAGGCGTGTGAAGAGGAAAAATGGGTGGCAGAGATTCGCGATCCAAGGAAAGTTGTTCGTGTTTGTCTTGGAACCTTCAACACCACCAAAGAAGCCGCCTGGGCCTATGACAAAGAAGCTCGTAAGATTCATGGAAAGAAAGCTAAAGTGAACTTTCCCAACGAGGATGACGAACACTCCATTCAACAATCTCGCAACATTATTCCAAACCTTCCTCCTCCTCCCATTTAA 252 0.4484 MVQFVIGKACEEEKWVAEIRDPRKVVRVCLGTFNTTKEAAWAYDKEARKIHGKKAKVNFPNEDDEHSIQQSRNIIPNLPPPPI* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3557 83 PANTHER EREBP TRANSCRIPTION FACTOR 14 74 - -
Amo19g3557 83 SUPERFAMILY DNA-binding domain 12 61 IPR016177 GO:0003677
Amo19g3557 83 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
Amo19g3557 83 MobiDBLite consensus disorder prediction 58 83 - -
Amo19g3557 83 CDD AP2 14 61 IPR001471 GO:0003700|GO:0006355
Amo19g3557 83 PANTHER DNA-BINDING DOMAIN 14 74 IPR044808 GO:0003700|GO:0009873
Amo19g3557 83 SMART rav1_2 14 66 IPR001471 GO:0003700|GO:0006355
Amo19g3557 83 Gene3D AP2/ERF domain 7 61 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3557 Amo-Chr19 149769065 149769316 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3557 14 62 AP2-EREBP Transcription Factor Family AT1G72360 71.429 6.95e-18 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3557 K09286 - rcu:8259910 97.4413