Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3544 ATGGCCATACCCATTTCTTTCTCTCTCTCTCTCTCTTACCCCGTCAGTATCTCACTTTCTCTCTTCATACACCCTTTCTCTCTCATGGAAAAGGCACTCCAAGCCGTCTTGGCCGCCGCCGGCACCTTCTTTGCCGTCACCCTCCTCTTGGCCATCGTCATCCTCGCCTGCCAGCGCCGCAAGGCCAAGACCTCCATGCTTCTAACCCGCCACGACAACCGCGCTACCAACCCAACCCGAACCCGAACCCGACCCCTCCCAAACACTGACCAATCGTCCGTCTCCGTCGTAGATGCCAGCTGGTCCTCCGATCCCAACCTCAAGATCTCCCTTACCGAGCTCGCACGCGCCACTGAAAACTTCTCTCCAAATCTCATCGTCGGCGACGGCAGCTTTGGCCTCGTCTATAAGGCCCGCCTCAACGACGGCACCGTCGTCGCCGTCAAGAAGCTCTCCCCGGACGCTTTCCAAGGCTTCCGCGAGTTCCAGGCCGAGATGGAAACTCTAAGCAAGCTCGATCACCCAAACATCGTCAAGATCCTCGGCTACTGGTCCTCCGGGCCCGAACGCTTACTCGTCTACGAGTTCATCGAACGGGGAAACCTCGATCAGTGGCTCCACGAGCCCACCACTGGGCCCAACGACCACATCTCCCTCAGCGACCTCCGTTTACCTCTGTCATGGGAAACCAGGGTCAACATCATTAGAGGCGTGGCCCACGGGCTTTACTATCTCCACGGGCTTGATAAGCCCATCATACACAGGGACATCAAAGCCAGTAACGTGTTATTGGACTCCGAGTTCAAGGCCCATATAGCTGATTTCGGGCTTGCTCGGAGGATTGACACGTCCAAATATTCACACGTGTCAACGCAGTTTGCTGGGACCATGGGCTACATGCCCCCGGAGTATGTTGCTGGGGCCAATGTGGCCAACCAGAAGGTGGATGTGTATAGCTTTGGGATTTTGATGCTTGAGACGGGCTCAGGGCGCAGGACTAATTTGCCAGTGAAGTTAGGGGAGGAAGATATTGGGCTGGTCCAGTGGGCCCGGAAGATAAAGGAGCAAAATAGTGAGATGAATATTGTTGATGTGAATATTTCAAGGGAAGGTTTAAGGGAAGAGTGTGTTAAAGAGTATGTGAGGATTGCTTGCATGTGCACTGCTGAGTTGCAGAAGGAAAGGCCTGAGATGCCTGAGGTTGTTCGCTTGTTGGATTCCATGCCGCTCTGA 1233 0.5466 MAIPISFSLSLSYPVSISLSLFIHPFSLMEKALQAVLAAAGTFFAVTLLLAIVILACQRRKAKTSMLLTRHDNRATNPTRTRTRPLPNTDQSSVSVVDASWSSDPNLKISLTELARATENFSPNLIVGDGSFGLVYKARLNDGTVVAVKKLSPDAFQGFREFQAEMETLSKLDHPNIVKILGYWSSGPERLLVYEFIERGNLDQWLHEPTTGPNDHISLSDLRLPLSWETRVNIIRGVAHGLYYLHGLDKPIIHRDIKASNVLLDSEFKAHIADFGLARRIDTSKYSHVSTQFAGTMGYMPPEYVAGANVANQKVDVYSFGILMLETGSGRRTNLPVKLGEEDIGLVQWARKIKEQNSEMNIVDVNISREGLREECVKEYVRIACMCTAELQKERPEMPEVVRLLDSMPL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3544 410 Gene3D Phosphorylase Kinase; domain 1 85 196 - -
Amo19g3544 410 ProSiteProfiles Protein kinase domain profile. 121 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3544 410 SUPERFAMILY Protein kinase-like (PK-like) 92 404 IPR011009 -
Amo19g3544 410 PANTHER RECEPTOR SERINE-THREONINE PROTEIN KINASE 29 407 - -
Amo19g3544 410 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3544 410 PANTHER OS01G0253100 PROTEIN 29 407 IPR045271 GO:0004714|GO:0006468
Amo19g3544 410 Pfam Protein tyrosine and serine/threonine kinase 127 405 IPR001245 GO:0004672|GO:0006468
Amo19g3544 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Amo19g3544 410 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Amo19g3544 410 CDD STKc_IRAK 127 408 - -
Amo19g3544 410 MobiDBLite consensus disorder prediction 72 92 - -
Amo19g3544 410 Gene3D Transferase(Phosphotransferase) domain 1 197 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3544 Amo-Chr19 149580165 149582715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3544 33 408 Receptor kinase-like Gene Family AT5G07280 38.918 8.14e-70 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Amo19g3544 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3544 - - gmx:100802728 519.235