Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3543 TATCGTAAGTTCGTAACATCTTCAGACTTGAGTCATCTTCGTCACCGCAACCACAGCACTTCGACCCAATACCTACGCTACGGTCACAGTTCACCGGAAAACCTCTTATCCGGCGCCGGAGAGGGGCTTCTCTTCCAACAGGAAACTGATATTAATAGCATTGGAGGATCTTCTGTCCCGTTTGTGCTGCCACAGGTTGTAAGCATTTCAGCAGTTACTCGGATGGATCCTAATGTAGAAGAAGAGTTGCCCCAATACATACATATAAATCAGAATGAATTTTTTATACGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGATTGCAAATATAATGTTGACGACCCTGATAGTGCATGTGGGGACGGCTGCCTCAATGTTTTAACCAGCACCGAATGCACTCCTGGATATTGCCCATGTGGTGACCTCTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGTTGGGGTCTTTTGGCTGATGAGAACATTAAGGCGGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAATTCAAGGTCTAACAGATGCATTTATCATTTGCCTTAATGCCTCTGAATCTATTGATGCAACAAGAAAGGGAAGTCTTGGCAGATTTATAAATCATTCCTGTCAACCAAACTGTGAGACAAGAAAATGGAATGTCTTGGGCGAAATAAGAGTTGGAATATTTGCGAAATATGATATTCCTTTTGGAGCTGAATTGGCATATGACTATAATTTTGAATGGTTTGGGGGCGCAAAGGTTCGCTGCCTCTGCGGTGCAGCTAGATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTCCAAGAAGATACTTATCTATGGGAAGATGATGATGACAGGTACTCTGTTGAGAAAATTCCTGTATATGACTCCGCGGAGGATGAATTGGGGACAGAAGTTCTTAAACGTATGAACTCAGACAGCTCTGGAAATGATTTTAATGGAAGAATAGGATCCTCCGTGGATAATACACTGAAAGCTGAGCAGCTACCAGAGTCCGGTGCTTTCAGTATTCCCCTTAATTTGGCTCAGATGAAGGATTTAGATGTCAAGAAGATTAAAACTGAAGTAGTAAACGAGGATATGAAATTGGATTCTGAAGATACTGAACAGGCCTTCTCCCAAAAGAATGCAATGATCTCGCGTATCCGAAGTAATAGTGCTGCCAGAAACTATCACCTTGGACCTGGGTCCATGTCTACTAAACGATCCAAGGCATATCGTGGCAGAAAGTTAAAGAATCTTGTTCAGAAGAAAGTTGATGCCAAGTTTGCCGCTGGACTCTTGGCTTCAAAGGAAGCACAAGAGGAGATTCTAAAATATGAGGAAGTCAAGAATAATGCTACTTCTGGTCTCGATTCCTTATACGATGAAATAAGGCCAGCCATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCTACCTCTGTAGCAGAGAAGTGGATTCAAGCTTGCTGCCTAAAATTGAAGGCAGAGTTTGATCTTTACTCCTCAATTGTCAAAAACGTGGCTTGCACTGCTCAAAGGTCTAAACCTCCCCCAGAAGCTGATAATGAAAACGAAATTAGGCTGTTGATGGGTTGA 1698 0.4217 YRKFVTSSDLSHLRHRNHSTSTQYLRYGHSSPENLLSGAGEGLLFQQETDINSIGGSSVPFVLPQVVSISAVTRMDPNVEEELPQYIHINQNEFFIRRHKKQKEEDIAICDCKYNVDDPDSACGDGCLNVLTSTECTPGYCPCGDLCKNQRFQKCEYAKTKLFKTEGRGWGLLADENIKAGQFVIEYCGEVISWKEAKRRSQAYEIQGLTDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKYDIPFGAELAYDYNFEWFGGAKVRCLCGAARCSGFLGAKSRGFQEDTYLWEDDDDRYSVEKIPVYDSAEDELGTEVLKRMNSDSSGNDFNGRIGSSVDNTLKAEQLPESGAFSIPLNLAQMKDLDVKKIKTEVVNEDMKLDSEDTEQAFSQKNAMISRIRSNSAARNYHLGPGSMSTKRSKAYRGRKLKNLVQKKVDAKFAAGLLASKEAQEEILKYEEVKNNATSGLDSLYDEIRPAIEEHERDSQDSVSTSVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRSKPPPEADNENEIRLLMG* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3543 565 Pfam AWS domain 117 155 IPR006560 GO:0005634|GO:0018024
Amo19g3543 565 SMART PostSET_3 282 298 IPR003616 -
Amo19g3543 565 SMART shorttest3 105 157 IPR006560 GO:0005634|GO:0018024
Amo19g3543 565 Pfam SET domain 169 275 IPR001214 GO:0005515
Amo19g3543 565 MobiDBLite consensus disorder prediction 546 565 - -
Amo19g3543 565 ProSiteProfiles SET domain profile. 158 275 IPR001214 GO:0005515
Amo19g3543 565 PANTHER SET DOMAIN PROTEINS 76 507 - -
Amo19g3543 565 ProSiteProfiles Post-SET domain profile. 282 298 IPR003616 -
Amo19g3543 565 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 76 507 - -
Amo19g3543 565 SMART set_7 158 281 IPR001214 GO:0005515
Amo19g3543 565 ProSiteProfiles AWS domain profile. 105 156 IPR006560 GO:0005634|GO:0018024
Amo19g3543 565 Gene3D SET domain 66 310 IPR046341 -
Amo19g3543 565 SUPERFAMILY SET domain 82 295 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3543 Amo-Chr19 149575201 149579741 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3543 140 297 C2H2 Transcription Factor Family AT2G23740 34.807 1.28e-20 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo19g3543 SET 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3543 - - lang:109335575 792.341