Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3539 ATGATGCATCATCAGCATCATCACGATGATGTTTCTGCCTCTGTTCTTTGGGGTGGCCATAAAAGAGGGCGTCAAGAAGAAACTAATATTCATACTGCTGGTACATCTTCTCATAATCGATTGTTACAACATGTCACTACTCTTCATGCATCACAACTAAGTGGCAGCAGCGGCAGCAGCAGTGCAGGAACAACTTCAAGCGAAAGTAGTGCATCCTACGAAGAAACAGGGGAGAGAAAGAGGAAATACAGAGGAGTGAGGCAGAGACCATGGGGAAAATGGGCCGCAGAGATTCGAGACCCTCAAAAAGCAGCAAGAGTTTGGCTTGGAACCTTTGACACGGCAGAAGCGGCCGCAAGAGCTTACGATGAGGCAGCATTGAGGTTCAGAGGAAACAGAGCCAAACTCAACTTCCCTGAAAATGTTAGAGCAATCCCAGTACCACCACAACAAACAACCGTCGTTCAGGAGTCTCTGGTACCAGTTTTTCGGCCGGTGATGCAGGCGCCACTGTCTCCTCTTCAGTTCTCCTCTGAACAGATGATGAAGGACTACTGTCAGTATTCTGAGTTATTGAAGAGCTCCAGTGACCATTTTCATGGATTTGATCAGTGGCTTTACCATTCACAAATGAATTTGGCAACTCAAACTTCATTGTTATCATCAACGTCTTTGGCTTCGTCTTCGTTGCCGACTGAGTTTTCACAGTCTACGAGTCAATCCTCATCTGCTTCTTTTCCTCTACTGTTTTCTTCAGTTCAACAGCAACCAGGACAACAACCAGGGTTTTTCCGTCCACCGAGATATTATTCTGACAATACCAGAGGAGCAAGCGGCGGATTGAGTTTTCCACCAACTTCAACGTGGCCAGATTCCCATGGCTATCCTCCTCCAAGTTGA 900 0.4656 MMHHQHHHDDVSASVLWGGHKRGRQEETNIHTAGTSSHNRLLQHVTTLHASQLSGSSGSSSAGTTSSESSASYEETGERKRKYRGVRQRPWGKWAAEIRDPQKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAIPVPPQQTTVVQESLVPVFRPVMQAPLSPLQFSSEQMMKDYCQYSELLKSSSDHFHGFDQWLYHSQMNLATQTSLLSSTSLASSSLPTEFSQSTSQSSSASFPLLFSSVQQQPGQQPGFFRPPRYYSDNTRGASGGLSFPPTSTWPDSHGYPPPS* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3539 299 Pfam AP2 domain 82 131 IPR001471 GO:0003700|GO:0006355
Amo19g3539 299 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Amo19g3539 299 MobiDBLite consensus disorder prediction 50 72 - -
Amo19g3539 299 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 20 258 - -
Amo19g3539 299 MobiDBLite consensus disorder prediction 275 289 - -
Amo19g3539 299 ProSiteProfiles AP2/ERF domain profile. 82 139 IPR001471 GO:0003700|GO:0006355
Amo19g3539 299 SMART rav1_2 82 145 IPR001471 GO:0003700|GO:0006355
Amo19g3539 299 SUPERFAMILY DNA-binding domain 82 140 IPR016177 GO:0003677
Amo19g3539 299 MobiDBLite consensus disorder prediction 254 299 - -
Amo19g3539 299 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Amo19g3539 299 PANTHER DNA-BINDING DOMAIN 20 258 IPR044808 GO:0003700|GO:0009873
Amo19g3539 299 MobiDBLite consensus disorder prediction 50 86 - -
Amo19g3539 299 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Amo19g3539 299 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3539 Amo-Chr19 149464952 149466679 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3539 23 147 AP2-EREBP Transcription Factor Family AT2G33710 52.800 1.33e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Amo19g3539 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3539 - - adu:107467893 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3539 19 149464952 149466679 Amo19g3560 19 149844816 149846419 PCT
Amo19g3560 19 149844816 149846419 Amo19g3539 19 149464952 149466679 PCT