Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3520 ATGGAACATACTGTTCCAAACAGTGTTACAACTTTGCTGCTATTCTTCTTGTGTCTCACATTAACAAAGATGGAAATGAGTACTTGCCTCTCACCTGATGGACAAGCACTTCTTTCTCTTGTTTCTGCATCTGAAAGATCATCATCAGCATCTTCCTCACTTCTCTCTTCATGGAACCCTTCAAGCTCAACACCATGTTCATGGAAGGGTGTTACATGCTCCCCACAAAGCAGAGTAATTTCCCTTTCTATCCCTGACACTTTCCTCAACCTTACCTATTTGCCTCCCCAGCTTTCTTCTTTGTCAATGCTGCAACTTCTCAACCTCTCTTCCACCAATGTCTCTGGCCAAATCCCTCCCTCTTTTGGTCAACTCTCCCATCTCCAACTCCTTGACCTCTCATCAAACTCTCTAACAGGTTCCATTCCTAATGAACTTGGAAACCTCTCTTCACTTCAGTTCCTTTTCTTGAACTCAAACAAACTCACAGGAACCATTCCTCAGCATCTTGCTGACCTTACCTCACTCCAAGTTCTGTGCCTGCAAGACAATCTCCTTAACGGTTCAATACCATCACAGTTAGGATCATTGAAATCTCTACAGCAGTTTAGGATTGGTGGAAATCCATACCTCACTGGAGAGATTCCATCACAGTTAGGACTACTCACAAACCTCACCATATTTGGTGCAGCTGCCACTGGACTTTCTGGTTCCATTCCCTCTTCATTTGGGAACTTGATCAATCTTCAAACTCTAGCACTTTATGACACTGATGTTTCCGGTTCAATACCRCCGGAACTCGGGCTCTGTTCCGAGTTGAGAAATCTTTATTTGCACATGAACAAGCTCACTGGKTCTATTCCTCCTCAGTTGGGGAAGCTGCAAAAGCTCACARGTKTGCTTCTKTGGGGGAATGCATTATCTGGGTCAATACCAGCTGAGATTTCTAACTGTTCATCACTTGTGGTGTTTGATGCCTCTTCCAATGAACTCACTGGTGAAATACCTGAGGATTTTGGGAAGCTTGTGGTTATGGAACAGCTTCATTTATCAGACAATTCCCTCTCAGGGAAAATACCATGGCAGTTGGGAAACTGCACAAGCCTTGCTACTGTTCAGCTTGACAAGAATCAGTTATCAGGTTCAATCCCTTGGCAGGTTGGGAAGTTRAAATTCTTGCAGAGTTTTTTCTTGTGGGGTAACTCAGTTTCTGGAACCATACCACCCTCTTTTGGGAACTGCACAGAACTCTTTTCGCTTGACCTTTCAAGGAACAAGCTCACAGGTTCAATCCCGGAAGAGATTTTCAGCTTGAAGAAGCTGAGTAAACTTTTGCTTCTTGGAAATTCTTTGACAGGAGAGTTGCCATCAAGTGTTGCAGATTGTGAATCTTTGGTGAGACTACGGCTCGGAGAAAACCAGCTTTTAGGGAACATTCCTAAAGAAATAGGCCAATTACAGAACCTGGTGTTTCTTGACTTGTACATGAATCACTTCTCTGGAAGCTTACCAGTAGAGATTGCCAACATAACAGTTCTTGAGCTCTTAGATGTGCATAACAACCACATAACCGGCGAAATTCCGTCTCAGATTGGGGAGCTTGCAAACTTGGAGCAGCTTGATCTAAGTCGAAACCATTTGACAGGTGGAATTCCTTGGAGCTTTGGAAACTTCAGTTATTTGAACAAGCTCATCCTCAACAATAATTTACTCACAGGATCAATCCCAAAATCTATTAGGAATTTGCAGAAGCTAACTCTTCTTGATTTGAGTTACAACAATCTCTCTGGTGACATACCTTCTGAGATTGGTTATGTTACAAGCTTAACCATTAGTTTGGACTTAAACTCGAATTCATTCACAGGAGAAATCCCAGAGTCAATGTCTGCTTTGACACAGTTACAATCACTTGATCTTTCTCATAATATGTTTTATGGAGGAATTAAGGTTCTTGGTTCTCTCACCAGTCTCACTTCCCTCAATATCTCGTACAACAATTTCTCAGGTCCTATCCCAGTAACTCCATTCTTCAGAACTCTTTCTTTTAACTCATGCCTTCAGAACCCCCTTCTATGCCAGTCCATTGATGGCAATACGTGTTCTTCAAGCCTGATTCAAAGAAATGGTATAAAATCTGCGAAAACCATAGCTTTCGTAACTGTGATTCTAGCTTCAATTGTGATAATTGCTGTTGCATCCTGGATTATAGCAACTCGTAGTAACAGGTATACAGTGGAAAAATCTTTGGGGGCATTGGCGTCCACATCAGGAGCTGAGGATTTCTCATATCCTTGGACCTTTATCCCATTTCAAAAGCTAAACTTCACCATAGATAACATCTTGGATTGCTTGAAGGATGAAAATGTGATCGGGAAGGGTTGCTCCGGTGTTGTCTACAAGTCTGAGATGCCTAATGGGGAGTTGATAGCAGTGAAAAAGCTATGGAAAGCTAGCAAAGAAGATGAAACACTGGACTCTTTCGCCGTAGAGATTCAGATTCTCGGATACATCCGGCACAGAAACATTGTGAGGCTACTGGGCTATTGTTCTAACAGGAGTGTCAAGCTTCTTCTCTACAATTTCATTCCAAATGGTAATCTGAGACAGCTCTTGCAAGGGAACAGGAACTTAGACTGGGAAACCAGATACAAGATTGCTGTTGGAACAGCTCAGGGTCTTGCTTACCTTCATCATGATTGTGTCCCTCCCATTCTTCACAGAGATGTCAAGTGCAATAACATACTTCTAGATTCCAAATATGAAGCATATCTCGCAGATTTTGGTCTTGCAAAGCTGATGAATTCACCAAGTTATCATCAGGCAATGTCTAGAGTTGCTGGTTCTTATGGATATATTGCCCCAGAGTATGGCTACTCAATGAACATAACTGAGAAGAGTGACGTCTACAGTTACGGAGTGGTTCTGCTGGAGATACTAAGCGGGCGCAGTGCCGTCGAATCCCATGTCGGAGATGGACAACACATAGTTGAGTGGGTGAAGAGGAAAATGGGGAGCTTTGAACCAGCTGTGTCAATACTAGACACAAAACTCCAAGGTCTACCAGATCAAATGGTGCAAGAGATGCTCCAAACACTTGGAATTGCCATGTTTTGCGTGAACTCTTCGCCATCAGAACGTCCCACGATGAAGGAAGTGGTTGCATTGCTAATGGAGGTGAAGAGCCAGCCTGAAGAGATGGGCAAAACCTCTCAACCTCTAATAAAGCACCCTTCAAATCAAAGCTAA 3246 0.4282 MEHTVPNSVTTLLLFFLCLTLTKMEMSTCLSPDGQALLSLVSASERSSSASSSLLSSWNPSSSTPCSWKGVTCSPQSRVISLSIPDTFLNLTYLPPQLSSLSMLQLLNLSSTNVSGQIPPSFGQLSHLQLLDLSSNSLTGSIPNELGNLSSLQFLFLNSNKLTGTIPQHLADLTSLQVLCLQDNLLNGSIPSQLGSLKSLQQFRIGGNPYLTGEIPSQLGLLTNLTIFGAAATGLSGSIPSSFGNLINLQTLALYDTDVSGSIPPELGLCSELRNLYLHMNKLTGSIPPQLGKLQKLTXXLLWGNALSGSIPAEISNCSSLVVFDASSNELTGEIPEDFGKLVVMEQLHLSDNSLSGKIPWQLGNCTSLATVQLDKNQLSGSIPWQVGKLKFLQSFFLWGNSVSGTIPPSFGNCTELFSLDLSRNKLTGSIPEEIFSLKKLSKLLLLGNSLTGELPSSVADCESLVRLRLGENQLLGNIPKEIGQLQNLVFLDLYMNHFSGSLPVEIANITVLELLDVHNNHITGEIPSQIGELANLEQLDLSRNHLTGGIPWSFGNFSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNNLSGDIPSEIGYVTSLTISLDLNSNSFTGEIPESMSALTQLQSLDLSHNMFYGGIKVLGSLTSLTSLNISYNNFSGPIPVTPFFRTLSFNSCLQNPLLCQSIDGNTCSSSLIQRNGIKSAKTIAFVTVILASIVIIAVASWIIATRSNRYTVEKSLGALASTSGAEDFSYPWTFIPFQKLNFTIDNILDCLKDENVIGKGCSGVVYKSEMPNGELIAVKKLWKASKEDETLDSFAVEIQILGYIRHRNIVRLLGYCSNRSVKLLLYNFIPNGNLRQLLQGNRNLDWETRYKIAVGTAQGLAYLHHDCVPPILHRDVKCNNILLDSKYEAYLADFGLAKLMNSPSYHQAMSRVAGSYGYIAPEYGYSMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGQHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPSERPTMKEVVALLMEVKSQPEEMGKTSQPLIKHPSNQS* 1082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3520 1081 SMART LRR_typ_2 173 197 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 149 172 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 486 509 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 631 658 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 125 148 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 534 557 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 582 606 IPR003591 -
Amo19g3520 1081 SMART LRR_typ_2 414 438 IPR003591 -
Amo19g3520 1081 Gene3D Phosphorylase Kinase; domain 1 769 861 - -
Amo19g3520 1081 SUPERFAMILY L domain-like 55 404 - -
Amo19g3520 1081 Gene3D Ribonuclease Inhibitor 388 707 IPR032675 -
Amo19g3520 1081 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Amo19g3520 1081 SMART serkin_6 784 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3520 1081 PANTHER - 9 1077 - -
Amo19g3520 1081 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Amo19g3520 1081 Gene3D Ribonuclease Inhibitor 286 387 IPR032675 -
Amo19g3520 1081 Gene3D Ribonuclease Inhibitor 191 285 IPR032675 -
Amo19g3520 1081 SUPERFAMILY Protein kinase-like (PK-like) 767 1056 IPR011009 -
Amo19g3520 1081 ProSitePatterns Protein kinases ATP-binding region signature. 790 813 IPR017441 GO:0005524
Amo19g3520 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 904 916 IPR008271 GO:0004672|GO:0006468
Amo19g3520 1081 PANTHER UNNAMED PRODUCT 9 1077 - -
Amo19g3520 1081 SUPERFAMILY L domain-like 375 702 - -
Amo19g3520 1081 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Amo19g3520 1081 Pfam Leucine rich repeat 536 595 IPR001611 GO:0005515
Amo19g3520 1081 Pfam Leucine rich repeat 393 451 IPR001611 GO:0005515
Amo19g3520 1081 Gene3D Transferase(Phosphotransferase) domain 1 862 1075 - -
Amo19g3520 1081 Pfam Protein kinase domain 786 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3520 1081 PRINTS Leucine-rich repeat signature 534 547 - -
Amo19g3520 1081 PRINTS Leucine-rich repeat signature 128 141 - -
Amo19g3520 1081 ProSiteProfiles Protein kinase domain profile. 784 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3520 Amo-Chr19 149163717 149167299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3520 29 1075 Receptor kinase-like Gene Family AT5G56040 44.444 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo19g3520 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3520 - - ccaj:109812175 1753.03