Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3500 ATGGAGAGAAAGTTCTGGGCTTTAGCTTTCATCTTGTGGTTCTTGTTGGTTCATCCACTATGGCTCATTTCTGCTAACATGGAAGGCGATGCTTTACATAGTCTGAGGACAAATTTACAGGATCCTAACAATGTTTTGCAAAGTTGGGATCCCACACTTGTGAATCCTTGCACATGGTTTCATGTAACATGCAACAATGATAACAGTGTCATAAGAGTTGATCTTGGAAATGCTGGTTTGTCTGGTCAACTTGTTACACAACTTGGTCAACTCAAGAATTTGCAGTATTTGGAACTTTACAGCAATAACATTACTGGCCCTATTCCAAGTGACCTGGGGAATCTTACTAACTTGGTGAGCTTGGATCTGTACCTAAATAGTTTCACTGGCCCTATCCCTGATTCATTGGGAAAGTTGTCGAAATTGCGGTTTCTCCGGCTTAACAACAACAGCTTGACGGGACCTATTCCAATGTCACTGACTAATATTTCATCTCTTCAAGTTCTGGATTTGTCTAATAACCATCTGTCTGGTGTGGTTCCTGATAATGGCTCCTTCTCATTATTCACTCCCATCAGTTTTGCCAACAACTTGGGTCTATGTGGACCAGTCACTGGACATCCTTGTCCAGGCTCTCCTCCATTTTCGCCTCCTCCCCCTTTTGTGCCTCCTCCCCCAATTTCTGCCCCTGGAGGTGGTAGTGCCACTGGGGCAATAGCCGGAGGAGTTGCTGCTGGCGCTGCTCTATTATTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGAAAGCCGCAAGAATTTTTCTTCGATGTGCCTGCTGAGGAGGATCCCGAGGTCCATCTTGGGCAACTTAAGAGGTTCTCACTACGTGAACTGCAAGTTGCGACAGACAGTTTCAGCAATAAGAACATTCTCGGGAGAGGAGGATTTGGTAAGGTGTACAAAGGACGTCTGGCAGATGGTTCATTGGTCGCTGTGAAAAGATTGAAAGAGGAACGCACACCTGGTGGGGAGCTTCAGTTTCAAACTGAAGTAGAGATGATCAGCATGGCTGTGCATAGAAATCTCCTACGTTTACGTGGATTTTGTATGACACCGACAGAAAGGCTACTTGTTTATCCTTACATGGCTAACGGAAGTGTTGCCTCATGCTTAAGAGAGCGTCCTGCACATCAAGAACCACTAGATTGGCCAACAAGGAAAAGAATTGCTTTGGGATCAGCAAGGGGCCTTTCGTATTTGCACGATCACTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTATTGGATGAGGAGTTTGAGGCTGTCGTTGGGGACTTTGGACTGGCAAAACTCATGGATTACAAGGACACCCATGTGACAACTGCCGTACGGGGCACAATTGGACATATAGCTCCGGAGTACCTATCTACCGGTAAATCTTCAGAGAAAACCGATGTTTTTGGCTATGGAATCATGCTTCTGGAGCTTATTACCGGACAAAGAGCTTTTGACCTTGCTCGACTTGCAAATGATGATGATGTTATGCTTCTTGATTGGGTAAAAGGGCTTCTGAAGGAGAAAAAGCTTGAAATGTTGGTTGATCCTGATCTACATAACAATTACATAGAAGCCGAGGTAGAGCAGTTAATCCAAGTCGCGCTGCTCTGCACACAAGGCTCCCCAATGGACCGGCCGAAGATGTCGGAAGTGGTGCGAATGCTTGAAGGCGATGGCTTGGCGGAAAGATGGGATGAGTGGCAAAAAGTGGAAGTTCTCCGGCAGGAAGTGGAACTTGCTCCTCATCCTAATTCTGATTGGATAGTTGACTCTACTGAGAATCTACATGCAGTGGAGTTATCTGGTCCAAGGTGA 1875 0.456 MERKFWALAFILWFLLVHPLWLISANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAGLSGQLVTQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLSKLRFLRLNNNSLTGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLGLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGGGSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPAHQEPLDWPTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLHNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3500 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3500 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Amo19g3500 624 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 14 624 IPR031048 GO:0004675|GO:0005102|GO:0006468
Amo19g3500 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Amo19g3500 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3500 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 624 - -
Amo19g3500 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Amo19g3500 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo19g3500 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Amo19g3500 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Amo19g3500 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Amo19g3500 624 SUPERFAMILY L domain-like 29 191 - -
Amo19g3500 624 Pfam Leucine Rich Repeat 165 182 IPR001611 GO:0005515
Amo19g3500 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3500 Amo-Chr19 148865163 148870049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3500 1 624 Receptor kinase-like Gene Family AT1G71830 88.836 0.0 1045
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo19g3500 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3500 K13418 - gmx:100789884 1119.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3500 19 148865163 148870049 Amo19g3500 19 148865163 148870049 ECH
Amo19g3500 19 148865163 148870049 Amo19g3500 19 148865163 148870049 PCT