Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3494 ATGGCAGCCTCTTCCGCCGGAAATCCGCCGACCTCCTCCCTTTCCTCATCCGCAGCATTATCTCGCGAGAAATTGAATTTCTCGGCGGATTATCCCGCGCGAATCGCACTATCCTCCGATCAGCTGAAACACTGTACGGAAGCGCTCTCGTTCTTCAAGGAGAAGCTCCACACTCCTCAGAGGATAGCTCAAGAGTTCGCTCGCTTGCAGGCAAATAGGATAACGCCAAGTGAGATGAGGAGAAGATGCACTGTGGCTCTCGATGCTGTCAATTTGAACAAAAATCGATATACTGATGTGTTGCCATTTGACAATAACAGGGTTGTTCTCAAGTCTAGCACGGATTATAGGCCTGAAGCACAGGGATATATCAACGCAAGCTGCATATCTGCCTCTTTGCCCGGAAATGTGTCGCAATTTATAGCCACACAAGGGCCGTTGCCTCACACATATGAGGATTTCTGGGAAATGGTAATCCAATATCATTGCCCTGCAATTGTGATGCTTACTAAGTTGGTCGACAATTACAAGACGATAAAGTGTGGAGATTACTTTCAAGCTGAGGATGGACCTAGAGAATGTGGTAATATCTCTATTATCAGTAAATGGATAAAATCTACTGAAACTTCACTGGTGTTGCGCCATTTGGAAGTAAACCATAAAGAGGCCGAAGATACACCGTTATCAGTTTTGCACATTCAGTATCCTGAATGGCCAGACCATGGAGTTCCAAGAGATACATCTGCTGTTCGTGAGATTTTTAGAAGATTGCACCATTTACCGGCAAACCTTGGCCCAATAGTGGTGCACTGCAGTGCAGGCATTGGTAGAACTGGAACATACTGCACAATTCACAACACAATTCAGAGAATACTTGCTGGTGATATGTCCGCTTTAGATATCTCAAGTACAATAGCTATGTTCAGGTCCCAACGAATTGGAATGGTTCAGACCCAGGATCAGTTTGTTTTCTGCTATGAAGCTATCATAGATGAACTAGAAGACCTTGTTTCTCTACAGAAGTGA 1026 0.4474 MAASSAGNPPTSSLSSSAALSREKLNFSADYPARIALSSDQLKHCTEALSFFKEKLHTPQRIAQEFARLQANRITPSEMRRRCTVALDAVNLNKNRYTDVLPFDNNRVVLKSSTDYRPEAQGYINASCISASLPGNVSQFIATQGPLPHTYEDFWEMVIQYHCPAIVMLTKLVDNYKTIKCGDYFQAEDGPRECGNISIISKWIKSTETSLVLRHLEVNHKEAEDTPLSVLHIQYPEWPDHGVPRDTSAVREIFRRLHHLPANLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDISSTIAMFRSQRIGMVQTQDQFVFCYEAIIDELEDLVSLQK* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3494 341 ProSiteProfiles PTP type protein phosphatase domain profile. 62 332 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 15 338 - -
Amo19g3494 341 SMART ptp_7 229 331 IPR003595 -
Amo19g3494 341 ProSitePatterns Tyrosine specific protein phosphatases active site. 269 279 IPR016130 GO:0016311|GO:0016791
Amo19g3494 341 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 334 IPR029021 -
Amo19g3494 341 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 251 323 IPR000387 GO:0016311|GO:0016791
Amo19g3494 341 SMART PTPc_3 61 334 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 15 338 - -
Amo19g3494 341 CDD PTPc_plant_PTP1 123 327 - -
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 122 129 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 140 160 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 228 245 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 266 284 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 299 314 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 PRINTS Protein tyrosine phosphatase signature 315 325 IPR000242 GO:0004725|GO:0006470
Amo19g3494 341 Gene3D Protein tyrosine phosphatase superfamily 35 334 IPR029021 -
Amo19g3494 341 Pfam Protein-tyrosine phosphatase 91 330 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3494 Amo-Chr19 148761268 148765353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3494 40 338 Protein tyrosine phosphatase (PTP) family AT1G71860 68.896 5.59e-163 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3494 - - gmx:548044 549.666