Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3455 ATGGAGCCTGTCGTCTCTGCTTCCACTTCAGCCACCAAGCCTCCTCCTGAAGTGCAGGCAGCGGAGGCAACCGCCACCATGCAACCTGCCCCACTGCGCAAGATCATGGCGGTGGCCACCATCGCCACCGGCATACAGTTCGGCTGGGCCCTACAACTCACACTACTCTCACCCTACGTCCAAATACTCGGAACTCCACACATGTGGGTCTCCTTCATCTGGTTCTGCGGCCCTGTCTCCGGCATCCTCGTCCAGCCCCTCGTCGGCTACCACAGCGACCGCTGCACCTCCCGCTTCGGCCCCCGCCGCCCGTTTATCGCCGCCGGAACCCTAGCCGTCGCCTTCGCAGGCTTCTTAATCGCATTCTCTGCCGACATCGGCCACCTCCTCGGCGACGAACTAGTCGCCACCGGAGAGGAGCACAAAATCCGTCCGCGCACCATCGGCCTCGTCATCCTCGGCTTCTGGATCATTGACTTCGCCAACAACATGCTCCAAGGACCGTGCCGCGCTCTCCTGGCCGACCTCGCTGCGGGGAATCAAAGCAAAACGAAAACCGCGTACGCACTCTACACGCTCTTCATGGCGGTCGGAAACGTTCTGGGCTCCGCCGCCGGGTCCTCCGGCGGACTTTACAGAATCCTGCCTTTCACAACGACGAAAGCATGCCACGACGAGTGCGCGGACGTGAAAACGTGTTTTATGATCTCCGTGTTGCTATTGGTTGTTATTGTAACCGTCAACTTGATGTACGTGAAGGAAAAACCGTTAACGGTTTCCATTGGGAAAAGTGAAAAAGGCGGGATGAGAGAATTATTGGGTGCATTGCAGGGGCTTAAGAGGCCGATGCGGATCCTTTTATTGGTGACGTGTTTCAATTGGATTGCGTGGTTTCCGTTTTTTGAGTACAACACTGACTGGATGGGGGTTGAGGTGTACGGAGGGAAGGATAAGGAGCAGAGTGTGTATGATACTGGGGTCCGCGAGGGTGCCACCGGGATGATGGTGAATTCTATTGTGTCTGGTGGCGCGTCCTTGGGGATTGGTGTGTTGGCGCGTGGGCTTGGTGGCGAGAAGAGGCTATGGGGTGTTGTTAACTTCTTGCTAGCCGTTTGTTTGGCCATGACGGTGCCTATCTCCAAGATGGCCAAACATTTGCGGCGGTATGCGGTGGGTGCTGGCGGATCTCTGGAGCCTCTTCCGCCGTCTCGTGGCGTCAAGGCTGCTGCCTTAACTCTCTACGCCGTCCTTGGAATTCCTCTTGCTATCACTTACTGCATACCCTTTGCTCTGGCATCTATATTCTCCACCAACGCAGGAGCAGGACAAGGTCTATCCCTGGCAGTTCTCAATCTTGCAGTTGTCATACCACAGATGTTGATGTCTGCTGTTAGTGGACCATGGGACAAATTGTTTGGTGGCAGTAACCTGCCATCTTTCGTGGTTGGTTCCGTAGCGGCTGCAATCAGTGGCATACTGTCCATAATCTTACTGCCCTCTCCGCCGCCGGACGTCAAGGCTGCAATCACCGGAGGAGGCTTTCATTAA 1548 0.5601 MEPVVSASTSATKPPPEVQAAEATATMQPAPLRKIMAVATIATGIQFGWALQLTLLSPYVQILGTPHMWVSFIWFCGPVSGILVQPLVGYHSDRCTSRFGPRRPFIAAGTLAVAFAGFLIAFSADIGHLLGDELVATGEEHKIRPRTIGLVILGFWIIDFANNMLQGPCRALLADLAAGNQSKTKTAYALYTLFMAVGNVLGSAAGSSGGLYRILPFTTTKACHDECADVKTCFMISVLLLVVIVTVNLMYVKEKPLTVSIGKSEKGGMRELLGALQGLKRPMRILLLVTCFNWIAWFPFFEYNTDWMGVEVYGGKDKEQSVYDTGVREGATGMMVNSIVSGGASLGIGVLARGLGGEKRLWGVVNFLLAVCLAMTVPISKMAKHLRRYAVGAGGSLEPLPPSRGVKAAALTLYAVLGIPLAITYCIPFALASIFSTNAGAGQGLSLAVLNLAVVIPQMLMSAVSGPWDKLFGGSNLPSFVVGSVAAAISGILSIILLPSPPPDVKAAITGGGFH* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3455 515 Pfam MFS/sugar transport protein 47 296 - -
Amo19g3455 515 PANTHER SUCROSE TRANSPORT PROTEIN SUC7-RELATED 21 508 - -
Amo19g3455 515 TIGRFAM GPH_sucrose: sucrose/H+ symporter 31 503 IPR005989 GO:0005887|GO:0008515|GO:0015770
Amo19g3455 515 Gene3D MFS general substrate transporter like domains 32 265 IPR036259 -
Amo19g3455 515 PANTHER SUGAR TRANSPORTER 21 508 - -
Amo19g3455 515 SUPERFAMILY MFS general substrate transporter 35 503 IPR036259 -
Amo19g3455 515 CDD MFS_SLC45_SUC 35 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3455 Amo-Chr19 148071082 148075305 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3455 28 515 Sucrose Transporter Gene Family AT1G71890 57.545 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3455 K15378 - gmx:547679 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3455 19 148071082 148075305 Amo19g3455 19 148071082 148075305 ECH
Amo19g3455 19 148071082 148075305 Amo19g3455 19 148071082 148075305 PCT
Amo19g3455 19 148071082 148075305 Amo19g3492 19 148740650 148744512 PCT