Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3448 ATGATTTTCAACCAAAAGCTTTGCCCTTTTGTTCTTTTCAAATCTTTTGCACTGATGGGTACCTCGAATCTTCTCCTCTTTCTCTTCTCTCTGCTGGGTTTGTGTGCTTTGTCAGCTGCCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGATGATATCGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAATGTGGGGTCTTATATTCGGCAGAGCCACTTGATGCTTGCACTGACCTCTCGAACAAAGCTCCACAACTTCCAAATGCGAGTTTGCCTTTTGTTTTGATGATTAGGGGAGGATGTAGCTTTGAGGAAAAGGTCAGAAGAGCACAAGCGGCTGGCTACAAAGCTGCAATTGTCTATGACAATGAGGATAGTGGTGTCTTGGTTGCAATGGCAGGAAATTCTGCTGGCATAAGAATACATGCTGTGTTTATATCAAAAGCTTCAGGTGAATTACTAAAGGAATATGCTGGAAGGACTGATGTGGAGCTATGGCTTATTCCAAGTTTTGAGAACTCAGCATGGTCGATCATGGCAATTTCATTTATTTCCCTACTAGCAATGTCTGCTGTGCTTGCCACCTGTTTCTTTGTTCGTAGGCATCGCATAAGAAGGGAAAGGCCTCAAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCAGTCTTAGAAGACAACTGTACCTCAAGAACATGTGCCATATGTCTTGAAGATTATTGTGTTGGAGAGAAGCTCAGGATACTCCCTTGTTGTCACAAGTTTCATGCTATATGCGTGGATTCTTGGCTTACCTCATGGAGAACATTTTGCCCAGTTTGTAAGCGTGATGCAAGAACTGGTTTAAGCGAACCTCCGCCTTCTGAGTCCACGCCTTTGCTTTCGACCAGCCCAGCATCTGTATCATCCTCCATCTTATCTTCTACAAGGTCATCATTAGCGTCATCCCCAGCTATTCAAATTGCTCGTCCACCTTCACATGCCTCGTCCGTTTCTCGCAACCACTCTTTAGCTAGCACCCCTTACGTTCAGCCGTCTTATAGGTCCTACCGACAATCCCCATCGCTAAGCATCAGTCGAAGCTCTGTAGACCTTAGGAATGCATCCCAAAGATCTCTAGCTTCTCACTTGAATTCACCACATTCCATGGGCTACCCATCTTTGTCTTCTCTTAACTCGAGGTTCATGTCTCCTTATGTTCCAAGTCCAAGCAATGCTTCTGTAAGTATTCTCGGGTCATCAAGTCACCGACAGCATCCACTCCGATACAGTGAGTCAGCTGCGAGTTTCTCGCCATTTGCATCCGCAAACTCCCTCCCAGAGTGTTAA 1386 0.4531 MIFNQKLCPFVLFKSFALMGTSNLLLFLFSLLGLCALSAAKVVLIGNNITLSFDDIEANFAPTIKGSGECGVLYSAEPLDACTDLSNKAPQLPNASLPFVLMIRGGCSFEEKVRRAQAAGYKAAIVYDNEDSGVLVAMAGNSAGIRIHAVFISKASGELLKEYAGRTDVELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAICVDSWLTSWRTFCPVCKRDARTGLSEPPPSESTPLLSTSPASVSSSILSSTRSSLASSPAIQIARPPSHASSVSRNHSLASTPYVQPSYRSYRQSPSLSISRSSVDLRNASQRSLASHLNSPHSMGYPSLSSLNSRFMSPYVPSPSNASVSILGSSSHRQHPLRYSESAASFSPFASANSLPEC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3448 461 CDD mRING-H2-C3H2C2D_ZSWM2 251 294 - -
Amo19g3448 461 SMART ring_2 252 293 IPR001841 -
Amo19g3448 461 CDD PA_C_RZF_like 35 181 IPR044744 -
Amo19g3448 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
Amo19g3448 461 Pfam PA domain 83 160 IPR003137 -
Amo19g3448 461 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 19 395 - -
Amo19g3448 461 MobiDBLite consensus disorder prediction 303 319 - -
Amo19g3448 461 ProSiteProfiles Zinc finger RING-type profile. 252 294 IPR001841 -
Amo19g3448 461 SUPERFAMILY RING/U-box 242 305 - -
Amo19g3448 461 SUPERFAMILY PA domain 100 168 IPR046450 -
Amo19g3448 461 Pfam Ring finger domain 251 294 IPR001841 -
Amo19g3448 461 MobiDBLite consensus disorder prediction 299 319 - -
Amo19g3448 461 Gene3D - 41 174 - -
Amo19g3448 461 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 19 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3448 Amo-Chr19 147868300 147873283 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3448 37 460 C3H Transcription Factor Family AT1G22670 48.618 5.20e-123 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3448 K15692 - gmx:100791248 662.144