Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3408 ATGGGAGTTTCTTCACATCCTTTTTCTTCTCTTGTTTCCCTCTCTTTGAATGATCTTGAAGTACTCAATGATCCATCATATTTGTGGAGCAAGGTGAGTGTCAAGGGTGGGAGGCCAAGAACAAGAACAAGAAGGGTTTTGATGAAGAGGATTGGTGGTTCTAGAAGATCAAGAGGAAGAGGAGCCAAATCCAATAATGGGATTCAGAGCAGGGTGAGAACATTGAAGAATCTTATACCAAACAGTGACAATAACATGGGTTTGGATGGACTCTTCAGAGAGACAGCAAATTATATATTGTCTTTGCAAAATAGAGTGAGAGTCATGCAGGTCATGGTTAAGGTTTTAACAGGTTCTGGTGGTGATGATGAGTGA 375 0.408 MGVSSHPFSSLVSLSLNDLEVLNDPSYLWSKVSVKGGRPRTRTRRVLMKRIGGSRRSRGRGAKSNNGIQSRVRTLKNLIPNSDNNMGLDGLFRETANYILSLQNRVRVMQVMVKVLTGSGGDDE* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3408 124 PANTHER TRANSCRIPTION FACTOR UPBEAT1 40 118 - -
Amo19g3408 124 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 111 IPR036638 GO:0046983
Amo19g3408 124 CDD bHLH_AtIBH1_like 66 113 IPR044549 GO:0006355
Amo19g3408 124 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 40 118 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3408 Amo-Chr19 147207639 147208476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3408 40 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G47270 49.383 1.62e-20 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3408 - - ccaj:109814433 114.005