Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3404 ATGGATATGGAATCATGTGTGCCTCCAGGATTTAGATTTCACCCAACAGAAGAAGAACTTGTGGGGTATTACCTCAAGAGGAAAATTAACTCCCTCAAAATTGATCTAGATGTTATAGTTGAGATCGATCTCTACAAAATGGAACCATGGGACATACAAGATAGATGCAAGCTAGGGTATGAAGAACAAAATGAGTGGTACTTTTTCAGCCACAAAGACAAGAAGTATCCAACAGGAACAAGAACAAACAGAGCCACTGCTGCTGGATTCTGGAAAGCAACTGGGAGAGACAAGGCTGTTATGTCGAAGAACAGGATCATTGGTATGAGGAAGACTTTGGTCTTCTACAAAGGACGTGCCCCTAATGGCCGCAAAACTGATTGGATCATGCACGAATATCGCCATCAAACCTCTGAACATGGCCCTCCTCAGGAAGAAGGATGGGTTGTATGTAGAGCATTTCGAAAACCAAGTCCAAGTCATCAAAGGCAATTAGGTTATGATCCATGGTGTAGTAATCATCATCATCAACCACATTATTTCAGAGATCAGAGTAGCTATGGTGGAAGGCCCTTATCAATCACAGATCTTCTAACTTCAGAAACTCATCATCATCATCATCTGCTGAATCACCCTACTGAAGGTACAAATTTTAGTCATCCCTTCGGTTCAGATCATCATCATCAACAAGAACAACAAGAGTTTGTAATATCAAATAATCATCAACAACTCATTGAGCTTCCACAGCTAGATAGCCCTACTAGTGCTTCTCTCTCAGCACCACCAACAACAAGTTTTGCAGTCAAAGAATCATCTTCCATTAATAATAACAATGAAGAGTATTGCAGTGATGAGAGGAACAACAACAACAATATTGATTGGAAAAGCTTGGATAACTTGTTTGCTGATACTTCTAATTACTTCTCAAATCCAAACATGTCCCAATTCATGACCATCAATCATCATCTAGGTTGTTTCCCTGGTTCATAA 990 0.399 MDMESCVPPGFRFHPTEEELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHQRQLGYDPWCSNHHHQPHYFRDQSSYGGRPLSITDLLTSETHHHHHLLNHPTEGTNFSHPFGSDHHHQQEQQEFVISNNHQQLIELPQLDSPTSASLSAPPTTSFAVKESSSINNNNEEYCSDERNNNNNIDWKSLDNLFADTSNYFSNPNMSQFMTINHHLGCFPGS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3404 329 Pfam No apical meristem (NAM) protein 8 134 IPR003441 GO:0003677|GO:0006355
Amo19g3404 329 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Amo19g3404 329 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Amo19g3404 329 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Amo19g3404 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 312 - -
Amo19g3404 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 30 5 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3404 Amo-Chr19 147177008 147180670 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3404 3 329 NAC Transcription Factor Family AT1G71930 54.571 9.14e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo19g3404 NAM 6.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3404 - - gmx:100811057 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3404 19 147177008 147180670 Amo19g3404 19 147177008 147180670 ECH