Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3386 ATGGACGGTAGTAATGGTGGGGTTGACCAATTTTGGTTATGCAGTGTTCAAAAACATGACACAGTCACAGAGTTAAGGTTTTACATGGATCCAAAAGGGAGCCTGTGTTCTAACAACTGGGCTAGGTCCGCTTGCTTGACCTCTCCCGGGAATGGATTGCAGACAAATATGTCATCGGATCCATCCCCTTTTTGTGGTGTTCGGATTGAAGCGCCTTTCAAAGACTTCAACCAACCCTCTACTAACCAGTCTTTGCTTATGGCGGAGCCAAACAAGGATATTAAGATTTCTGATATAGAGAACTGTCCACTGACTGACTCATCATCGCAAACCGGTAAACTTCAAGATTGGGATCCGAATGTGATGTTAAATAACCTTTCCTTTCTGGAAGAAAAGATTCATCAGCTCCAGGGTCTTGTTCATTTGATTGATAATAAGAAGTGTCAACCTTTTGCGCAACCTGATGCGCTTGTGACACAGGAGCAGCAACTCATCACAGCCGATCTTACATCAATTATTGTTCAACTGATCTCTACTGCTGGTAGTCTTCTCCCGTCCGTTAGGCACACTCTCGCAAACACAAGTCCATTGGTCAGTCAGCTTAGCCAGCTTCGTGGCCTTAACCTTCCTTTTGGATCCGGCCCCAGTGGTGGTATTCAGCCACAAAATAATAATGTAAATAAAGTGTTTGATCAGTCCACTCAGAATGATGTACCTAATAATTGTGAAGTGGAGCAAAACAACATGGAAGAGCATGAAACAAAAGATGAAGAAGATGTGGAGGAGGGAGAGAACCTTCCACCTGGTTCCTATGAGATTTTGCAGTTAGAGAAAGAAGAAATCCTTGCACCCCATACACATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGGGATGCGAATCTTCGCATGCACATGCGGGGACATGGGGATGAGTACAAAACCCCGGCGGCTCTTGCAAAGCCACATAAAGAAACCGGATCCGAACCAAAGCTCATCAAGAGGTATTCCTGTCCCTATGCCGGCTGCAAGCGAAATAAGGATCACAAGAAGTTCCAACCTTTAAAGACCATTTTATGTGTTAAAAACCACTACAAAAGGACGCATTGCGACAAGAGTTACACTTGTAGCAGATGCCACACCAAGAAGTTTTCAGTCATGGCAGACCTTAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGCTTTGTTCATGCGGTACAACATTTTCGAGGAAGGACAAGCTTTTCGGACACATTGCTCTTTTCCAAGGCCATACACCTGCAATTCCTTTGGAAGAAACTAAAGTACCGGCGGTTCCAACTGATCTTGACAGCAAAGATAACACATGTGATAAGGTTGGAAATATGAACTTCTGTTTCGGATCAAATCCTCCAAATGAAAATGAAGTTCAAAACATCATGGATGTGAAGGGTAACATTGATGATCCAATTAATTATTTCTCATCATTGAACTTTGAAGGTTGCAACTTTGGTGGGTTTAATGAATTCTCCCAGTCTCCATTTGAAGATTCAGATGCTTCTTTCTCATTTCTTATGTCTGGATCTTTTAACTATGCTCCTAAACCAGGATGTGAATCAACTTCTGACAATCTGTAG 1620 0.4259 MDGSNGGVDQFWLCSVQKHDTVTELRFYMDPKGSLCSNNWARSACLTSPGNGLQTNMSSDPSPFCGVRIEAPFKDFNQPSTNQSLLMAEPNKDIKISDIENCPLTDSSSQTGKLQDWDPNVMLNNLSFLEEKIHQLQGLVHLIDNKKCQPFAQPDALVTQEQQLITADLTSIIVQLISTAGSLLPSVRHTLANTSPLVSQLSQLRGLNLPFGSGPSGGIQPQNNNVNKVFDQSTQNDVPNNCEVEQNNMEEHETKDEEDVEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKETGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLEETKVPAVPTDLDSKDNTCDKVGNMNFCFGSNPPNENEVQNIMDVKGNIDDPINYFSSLNFEGCNFGGFNEFSQSPFEDSDASFSFLMSGSFNYAPKPGCESTSDNL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3386 539 SUPERFAMILY beta-beta-alpha zinc fingers 285 312 IPR036236 -
Amo19g3386 539 SMART c2h2final6 336 369 IPR013087 -
Amo19g3386 539 SMART c2h2final6 287 309 IPR013087 -
Amo19g3386 539 SMART c2h2final6 374 396 IPR013087 -
Amo19g3386 539 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 523 - -
Amo19g3386 539 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 29 523 IPR044300 GO:0010044|GO:0010447
Amo19g3386 539 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 314 IPR013087 -
Amo19g3386 539 ProSitePatterns Zinc finger C2H2 type domain signature. 289 309 IPR013087 -
Amo19g3386 539 Gene3D Classic Zinc Finger 271 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3386 Amo-Chr19 146922905 146925441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3386 255 537 C2H2 Transcription Factor Family AT1G34370 70.934 1.03e-140 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g3386 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3386 - - gmx:100170687 828.55