Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3383 CAGATACATGAAGAGGCTAGGAAGTTTGCATATCAAATAGGGGTTAAGGTGGTTGTTGCTTATGGCGGAGCTCCAATAAACCATCAGCTACGAGATCTTGAGAAGGGGGTGGACATTCTCGTCGCAACTCCTAGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATCAGATATCTTGCACTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCACAAATAAGGAAGATTGTTGAACAAATGGATATGCCCCCTCCAGGTGTAAGACAAATTACGCTATTCAGTGCCACATTTCCTAAAGAGATACAGAGACTAGCCTCTGATTTCCTGTCAAGATACATTTTTCTCGCTGTTATGAGCAAATACATTTTTTTTATATTTAAAAATTTATTTGTCTTGTTATTTAATATTCTATATAAATTTTATTTTTATTTTTTTATTTTATTTTATTTTATTTTTTACTATTTTTCAAATAAAAAAATAATTAAAAAATATAGCTAA 522 0.3352 QIHEEARKFAYQIGVKVVVAYGGAPINHQLRDLEKGVDILVATPRRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQITLFSATFPKEIQRLASDFLSRYIFLAVMSKYIFFIFKNLFVLLFNILYKFYFYFFILFYFIFYYFSNKKIIKKYS* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3383 173 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 123 IPR014001 -
Amo19g3383 173 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52C 1 125 - -
Amo19g3383 173 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 125 - -
Amo19g3383 173 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 123 IPR027417 -
Amo19g3383 173 SMART ultradead3 1 133 IPR014001 -
Amo19g3383 173 Pfam DEAD/DEAH box helicase 1 112 IPR011545 GO:0003676|GO:0005524
Amo19g3383 173 Gene3D - 1 129 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3383 Amo-Chr19 146898619 146899750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3383 1 125 Eukaryotic Initiation Factors Gene Family AT3G13920 36.000 8.78e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3383 K11594 - aip:110267265 256.144