Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3380 ATGTCCGGCAATACTAATTGCACTGTTTACATAGGTAATCTGGATGAGAGGGTCACAGACAGAGTCTTGTATGATATTTTAATTCAAGCAGGACGAGTGGTAGATTTACATATTCCTAAAGATAAGGAATCAGAAAAACCGAAAGGCTTTGCCTTTGCAGAATATGAAACTGAGGAGATTGCGGATTATGCTGTCAAGCTTTTCTCAGGCCTTGTAACACTCTACAACAGAACACTGAAGTTTGCGTCTACTAAAAAACAGATATCTGGGAGAGATAAAACCCCTAACGGTTCTGCTGGAGTTACACCAACATCAAATTCTTCTCAAAGATCAAGGCCTTATCCAGTGCCGTTTAATAACTCAGAATCTGATAAGCTATCAGCACATGACCGTTTTTCGGATTATGCAGCTCCTCGTCGCCGTGTAACTGACCTACCTAGTGGGCATGGATCTTACAACAGTGGCCATGATTTTGGGTTCAGCCGTAGAGCTTTTGGGGCAACATTGGACAGCATAAGTGGTTCTAGGTCTCGCCGCTAG 540 0.4296 MSGNTNCTVYIGNLDERVTDRVLYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADYAVKLFSGLVTLYNRTLKFASTKKQISGRDKTPNGSAGVTPTSNSSQRSRPYPVPFNNSESDKLSAHDRFSDYAAPRRRVTDLPSGHGSYNSGHDFGFSRRAFGATLDSISGSRSRR* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3380 179 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Amo19g3380 179 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 179 - -
Amo19g3380 179 MobiDBLite consensus disorder prediction 85 158 - -
Amo19g3380 179 Gene3D - 2 93 IPR012677 -
Amo19g3380 179 PANTHER OS01G0876500 PROTEIN 1 179 - -
Amo19g3380 179 MobiDBLite consensus disorder prediction 124 138 - -
Amo19g3380 179 SMART rrm1_1 8 82 IPR000504 GO:0003723
Amo19g3380 179 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Amo19g3380 179 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Amo19g3380 179 MobiDBLite consensus disorder prediction 85 123 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3380 8 65 Eukaryotic Initiation Factors Gene Family AT1G49760 32.759 4.44e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3380 K12831 - gmx:100784532 261.536