Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3360 CTTTTTCCTTTCTTTCCTTCCCTCCCTTTTTGTCCTTTCTTTATCTTCACCTTCATTTTGCAGAGACATCTCTCTGATTCTCATGCAAAGTTAAAGGAATTGGAGATGGGGAGGAAAGGGAGTTGGTTCTCTGCTGTGAAGAAAGTTTTTGGTTCTGAAAACAAAAAGGACCAGGAAAAGAACACAAAACCACAGAAAACCCATAGTCATGGCCATAGCCATAGCAATAGTAAGTCCAAATTAGGATGTTTTGGACACCATGATAACAATGAAGCCGGAAATGAAGCGCAGGGAATAGTAGTTGTTCCGGCGCTTCCGCGTAAGAAAGAACCAAAACAAGCAAGAGTGGCAGGTCAGAATGAGCCGGACCAGCAGGCTTTCTCTTTGGTCTTGGCTACTGCTGTCGCAGCAGGTGCTGCTGTCGCGGCCGCGGCTGAGGCTACTCGTCCCAAGACTGTGACGCCTCGTCGCCGTGAAAAACTGAAGGATGATGAAGCAGCAATCATGATTCAGACAGCCTTCCGTGGATATCTGGCGAGGAAAAAACTGCGAGGCTTGAGAGGTTTGTCGAGGTTGAGAACATTGGTAAGAGGGCAATCTGTGAAAAGACAATCAGCCTCTACCTTGCAATGCATGCAGACTCTTTCGAAACTGCAGTCTCAAGTTCGCGCGAGGAAGATCAGAATGTCTGAAGAGAACCAGGCTCTTCAGCGCCAGCTCCTGCAGAAACGGGAGAAGGAGCTTGAGAAGTTGCAAGCTGCTCAAGCTGAATGGGATCATAGAAAGGATTCAAAAGAGCAAGTTGAAGCAAAATTGTTGCACAGGCAAATTGCTACCATGAGAAGGGAGAAGGCTCTGGCTTATTCAATGACACATCAGCAAACTTGGAGGAACAATCTAAAATCAGGCACGAATGCCTCGTTTATGGATCCAAACAATCCTCACTGGGGCTGGAATTGGCTTGAGAGATGGATGGCTGTAAGGCCATGGGAGGGACAAAGCACATTCCAACACAATGAGCCTGCACCTCTAATTAGCACAGCCAGAAGCACGCTATCAGTTGGCGAAATAACCAAACTGTATACTCTACGCGACGATGCTAACATTAGCAAGAACTCCCCTAGGGCCATAAAAACAGGCCGGTCGCGCAGCGGCCTTAACTCGCCCTCAAATGTACTCACCCCATCAAAGTCCACAGCCTTTTTCACAGCTTCCCCCACTCCAAGGAGTCTCAGGGCAGCTAGTCCTAAACTTGGTTCCTGGGGTGGTGATGGAGACAAGAGGAATGCATTTGGCATTAGGAGGGAGGGCAACCGTAGGCACAGCATCGCCATTTCGCCTGCGAGGGATGATGAGCTCCTTAACTCACCTATGAACAGATCACCAAAGAAAGCAGCAGCAACAAAGGCCTCAAAATCCTTCAACATGGCAAAGAGCAGTGTTAGCTCATCTGAGAAATCAAGTCCTGCTGCTGCAGTAAACAAGAGACTCTCTTTGTCTCAATCTCCAACTTCAAATTCAAGAAGGCTTTCTACTCCAGGCAAGGTGGGGACAATTTCCAACAAGAGCAATGCTGCTGGTGCTACTATGAGAAAGTGA 1599 0.479 LFPFFPSLPFCPFFIFTFILQRHLSDSHAKLKELEMGRKGSWFSAVKKVFGSENKKDQEKNTKPQKTHSHGHSHSNSKSKLGCFGHHDNNEAGNEAQGIVVVPALPRKKEPKQARVAGQNEPDQQAFSLVLATAVAAGAAVAAAAEATRPKTVTPRRREKLKDDEAAIMIQTAFRGYLARKKLRGLRGLSRLRTLVRGQSVKRQSASTLQCMQTLSKLQSQVRARKIRMSEENQALQRQLLQKREKELEKLQAAQAEWDHRKDSKEQVEAKLLHRQIATMRREKALAYSMTHQQTWRNNLKSGTNASFMDPNNPHWGWNWLERWMAVRPWEGQSTFQHNEPAPLISTARSTLSVGEITKLYTLRDDANISKNSPRAIKTGRSRSGLNSPSNVLTPSKSTAFFTASPTPRSLRAASPKLGSWGGDGDKRNAFGIRREGNRRHSIAISPARDDELLNSPMNRSPKKAAATKASKSFNMAKSSVSSSEKSSPAAAVNKRLSLSQSPTSNSRRLSTPGKVGTISNKSNAAGATMRK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3360 532 ProSiteProfiles IQ motif profile. 163 191 IPR000048 GO:0005515
Amo19g3360 532 MobiDBLite consensus disorder prediction 372 532 - -
Amo19g3360 532 MobiDBLite consensus disorder prediction 372 410 - -
Amo19g3360 532 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 36 526 - -
Amo19g3360 532 Coils Coil 226 261 - -
Amo19g3360 532 MobiDBLite consensus disorder prediction 53 88 - -
Amo19g3360 532 PANTHER IQ-DOMAIN 5-RELATED 36 526 - -
Amo19g3360 532 Gene3D - 149 183 - -
Amo19g3360 532 Pfam IQ calmodulin-binding motif 165 184 IPR000048 GO:0005515
Amo19g3360 532 MobiDBLite consensus disorder prediction 466 532 - -
Amo19g3360 532 MobiDBLite consensus disorder prediction 428 447 - -
Amo19g3360 532 SMART iq_5 162 184 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3360 Amo-Chr19 146311445 146314469 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3360 36 516 IQD Protein Family AT5G03040 39.474 2.11e-85 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3360 - - gmx:100807725 413.69