Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3326 ATGGACCCAGAGACACTTGATAATGTATCAATAGTGTTCCACATAAAGTATACCAGGATTAATGAGGACTCATCACCTGATGTGATGGTTCTATCTGGTAGTTTATCAATGGAGGTCAACGAACAAAGTAATGAAATAAACGAATTGTCTGACCATGGATTCACTCCAGAGGTTTATTATCAAAAGACCATCACAGCTTCAGATATGGGTCAATCTAGACTGTATCTGGCTTCGAAATTTGCTGCATATCTTAAACTATCTGGAGATGATTCGATTTGGACAATCACTGGTCCAGGTTCCAATGTAGAGAAGAATGTGTTCTTTTTCCACTTATTGAAAAGTGGAGGAAGAGGTGGAGAATGGAAGTTTGGGGTCGGGTGGAATGAATGTTCTCGAGTATACAATTTAAAGGAGGGGGACAATATTACCTTGAAACTCGACTCGTTACCTAATCGCCGGATAGAGTTGTCGATTCAACGATGTTAG 486 0.3992 MDPETLDNVSIVFHIKYTRINEDSSPDVMVLSGSLSMEVNEQSNEINELSDHGFTPEVYYQKTITASDMGQSRLYLASKFAAYLKLSGDDSIWTITGPGSNVEKNVFFFHLLKSGGRGGEWKFGVGWNECSRVYNLKEGDNITLKLDSLPNRRIELSIQRC* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3326 161 Gene3D - 38 160 IPR015300 -
Amo19g3326 161 SUPERFAMILY DNA-binding pseudobarrel domain 58 149 IPR015300 -
Amo19g3326 161 CDD B3_DNA 59 147 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3326 Amo-Chr19 145816381 145817215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3326 45 160 RAV Transcription Factor Family AT1G50680 33.333 3.33e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3326 - K11981 adu:107480131 228.794