Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo19g3322 | ATGCCTCTTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGTTGAAAGTTAGGGTTCTAAGGCTTTGGGTTTGTGGAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATATTATCCCTAAGACTTGTTTCAACATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGGTGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGGGAAAATTGTGAAAATGATTGTGCTTGAATTAACTTTAAAAGATCTTACAGTGAGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATATTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTTAGGCAGAGGTGCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATACGTTTAACTAGAAAATGTACTATTGAAGAGCTTCAAGATAACAATCAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATAGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTAACTTGTTTATTGAGGTTCAAAGAGATGCGAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATCGCACTTTCCGAGTTAGGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTCCCAATTATGATGCTGATGACGAGTCTACTCCAAAAAAGGAGCCTGATTTACCCAAATCTGTTCCTTGTGGAAAAGGAGATATTGGTATTAAGAAGGAGTCATCAAAGACTCTTATCAAAAGTGAGAAAGTTGCTGGGACTGAGTTTTCTACGTTAATTAATGGTGAAGATGGAAAAGATGAGAAAACACCTAGCAATGATACTGTTAGTGATGATCTTTCTACTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTCTCCATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATGATGTTGTGACCTCGAAGGGCAAGAGGAATTTGAATCCCCAATTTGAAAAGGCGGCTGCTGATGCAGATGGGCGTGGGTTCAAGATTGTCAAGGTTAATGGAGTTTGA | 1662 | 0.3827 | MPLPFDMISKMHPPREAWRLKVRVLRLWVCGKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDIIPKTCFNMFPFSELLNMTQDYDFLVGVIGLLTSVGEEKEYAKEGKIVKMIVLELTLKDLTVRCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYATQILFNPDLPEVVEFRQRCNGTQPLFIANEGKVVSLEDDFIRLTRKCTIEELQDNNQEGSFIIFGTIQGIVEDRGWWYSACVCGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEGIFLLFDREASYLLKKSCANLFIEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYRTFRVRRICDDPTIIAMFELPNYDADDESTPKKEPDLPKSVPCGKGDIGIKKESSKTLIKSEKVAGTEFSTLINGEDGKDEKTPSNDTVSDDLSTELDILLSSPEKETQEVLSHVLHAPSQYGEKLIHENDVVTSKGKRNLNPQFEKAAADADGRGFKIVKVNGV* | 554 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo19g3322 | 553 | CDD | RPA1_DBD_C | 251 | 394 | IPR013955 | - | |
| Amo19g3322 | 553 | Gene3D | - | 93 | 226 | IPR012340 | - | |
| Amo19g3322 | 553 | SUPERFAMILY | Nucleic acid-binding proteins | 99 | 222 | IPR012340 | - | |
| Amo19g3322 | 553 | MobiDBLite | consensus disorder prediction | 413 | 433 | - | - | |
| Amo19g3322 | 553 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 51 | 346 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
| Amo19g3322 | 553 | CDD | RPA1_DBD_B_like | 120 | 221 | - | - | |
| Amo19g3322 | 553 | Pfam | Domain of unknown function DUF223 | 32 | 112 | IPR003871 | - | |
| Amo19g3322 | 553 | Pfam | Replication factor-A C terminal domain | 265 | 346 | IPR013955 | - | |
| Amo19g3322 | 553 | Gene3D | - | 242 | 399 | IPR012340 | - | |
| Amo19g3322 | 553 | Gene3D | - | 29 | 91 | IPR012340 | - | |
| Amo19g3322 | 553 | SUPERFAMILY | Nucleic acid-binding proteins | 248 | 394 | IPR012340 | - | |
| Amo19g3322 | 553 | CDD | RPA1_DBD_A_like | 19 | 86 | - | - | |
| Amo19g3322 | 553 | MobiDBLite | consensus disorder prediction | 413 | 428 | - | - | |
| Amo19g3322 | 553 | PANTHER | ANIMAL RPA1 DOMAIN PROTEIN | 51 | 346 | - | - | |
| Amo19g3322 | 553 | SUPERFAMILY | Nucleic acid-binding proteins | 4 | 91 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo19g3322 | Amo-Chr19 | 145782789 | 145785668 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo19g3322 | 11 | 338 | Core DNA Replication Machinery Family | AT5G08020 | 22.911 | 5.79e-16 | 79.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo19g3322 | - | - | adu:107471135 | 927.546 |