Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3311 ATGACGAAGGACCTTGAAGTTACCGAGAGAGGCTCTTTCTCCGGCAAGGACTACCATGACCCACCACCCGCACCCCTCATCGACGCCGAGGAGCTCACCAAGTGGTCTTTCTATAGAGCTCTCATTGCTGAGTTCATTGCCACCCTCCTCTTCCTCTACATCACCGTCCTCACCGTCATTGGCTACAAGAGCCAGAGCGACCCCAAAGCCGGCGGTGATATGTGCGGCGGCGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGCGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGCATCTCAGGAGGACACATCAACCCGGCAGTGACGTTCGGGTTGTTCTTGGCGCGCAAGGTGTCGTTGATAAGAGCAATATTGTATATGGTGGCTCAGTGCTTGGGTGCTATCTGCGGTGTTGGCTTGGTCAAGGCCTTCCAGACATCCCTCTACGTCAGGTACGGCGGCGGCGCCAACTCCCTCGCCGACGGTTACAGCAAGGGCACCGGTTTGGGTGCTGAGATCATTGGTACCTTTGTTTTGGTCTACACCGTGTTCTCCGCCACCGATCCCAAGAGAAATGCCAGAGACTCTCATGTCCCTGTTTTGGCACCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACTTGGCTACCATCCCGGTCACCGGCACCGGCATCAACCCTGCTAGGAGTCTTGGTGCTGCTGTTATCTACAACAAATCCCAGCCATGGGATGACCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCAGCCATTGCAGCCTTCTACCACCAATTCATCTTGAGGGCAGGGGCAGCGAAGGCTCTTGGATCATTCAGGAGCAACCCCAATGTCTAA 864 0.5475 MTKDLEVTERGSFSGKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKSQSDPKAGGDMCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQTSLYVRYGGGANSLADGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKSQPWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPNV* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3311 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Amo19g3311 287 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Amo19g3311 287 Pfam Major intrinsic protein 31 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Amo19g3311 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 MobiDBLite consensus disorder prediction 1 16 - -
Amo19g3311 287 MobiDBLite consensus disorder prediction 1 22 - -
Amo19g3311 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo19g3311 287 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 2,4-RELATED 1 284 - -
Amo19g3311 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 284 IPR034294 -
Amo19g3311 287 TIGRFAM MIP: MIP family channel proteins 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3311 Amo-Chr19 145547263 145550179 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3311 1 287 Major Intrinsic Protein MIP AT2G37170 86.063 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3311 K09872 - gmx:100817292 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3311 19 145547263 145550179 Amo19g3311 19 145547263 145550179 ECH