Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3302 ATGGTTGGACCAAACTTCATGGACGAGCTAGACTGCGGCAACTTCTTCGATCACATCGACGACCTCCTCGACTTCCCCGTCGAAGACGTCGACGGTGCCGGAGCCGCCGCATTTCCCGCCGCCGCAGCCGCCGGGAACTGCAACTCGCTCGCCAGTATATGGCCTCCGGAGACCGACTCGTTCCCCGGCTCCGACTCGGTGTTTTCCCGCAACAGCGCCTCAGACCTCTCGGCGGAGCTTTCAGTTCCGTACGAGGACATTGTCCAATTGGAATGGCTGTCCAATTTTGTGGAGGACTCTTTCTCCGGTGGGAGCCTCACCATGAAGAAGGTGGAGCAGCCATCCTGCACCACGAAGGATGACTCTGCTCACAACCAATTCCAAACATCCAGCCCGGTTTCTGTCCTGGAGAGCAGCAGCTCATGCTCGGGCAGCAAGGTGCCGCCTCGCAGCCCGGAGGTTTACATCCCTGTGCCGTGTGGGCGTGCACGCAGCAAGCGTCCACGCCCGGCGACATTCAATCCTCGTCCGGCCATGCAGCTCATCTCCCCTGCCTCATCCTTTGTTGGGGAAAACATGCAGCCAAATGTCATCTCGGCCACCAAGGCCTACTCGGATTCCGAGAATGTTGCCGAGTCTCAACCGGTCATGAAGATGCCGAAGCAAGTTTCCGGGGAACCCAAGAAGAAGAAGAAAATCAAGGTGACGCCTCCATCACTAGGCCAAGCTGATGATTCAAACCAGAATGCTTCACAGCCAGTTAGGAAATGCATGCATTGTGAGATCACCAAGACACCTCAGTGGAGGGCAGGGCCAATGGGGCCAAAAACACTCTGCAATGCATGCGGCGTTCGCTACAAGTCCGGCCGGCTTTTCCCCGAGTACCGGCCAGCCGCCAGTCCAACTTTCTGCCCATCCGTGCACTCCAATTCCCACAAGAAGGTCCTTGAAATGAGATGCAAGGGCATTGAAAAATCCGGTTTTGCAAATCATCATGCAGATGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATTTGA 1059 0.5619 MVGPNFMDELDCGNFFDHIDDLLDFPVEDVDGAGAAAFPAAAAAGNCNSLASIWPPETDSFPGSDSVFSRNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEQPSCTTKDDSAHNQFQTSSPVSVLESSSSCSGSKVPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMQLISPASSFVGENMQPNVISATKAYSDSENVAESQPVMKMPKQVSGEPKKKKKIKVTPPSLGQADDSNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSVHSNSHKKVLEMRCKGIEKSGFANHHADASPELIPNTNSSLTLEYI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3302 352 SMART GATA_3 251 301 IPR000679 GO:0006355|GO:0043565
Amo19g3302 352 MobiDBLite consensus disorder prediction 116 147 - -
Amo19g3302 352 Pfam GATA zinc finger 257 290 IPR000679 GO:0006355|GO:0043565
Amo19g3302 352 MobiDBLite consensus disorder prediction 116 150 - -
Amo19g3302 352 PIRSF Txn_fac_GATA_plant 3 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Amo19g3302 352 CDD ZnF_GATA 256 313 IPR000679 GO:0006355|GO:0043565
Amo19g3302 352 PANTHER GATA TRANSCRIPTION FACTOR 8 1 352 - -
Amo19g3302 352 PANTHER GATA TRANSCRIPTION FACTOR 1 352 - -
Amo19g3302 352 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 314 - -
Amo19g3302 352 MobiDBLite consensus disorder prediction 207 252 - -
Amo19g3302 352 MobiDBLite consensus disorder prediction 158 177 - -
Amo19g3302 352 Gene3D - 252 301 IPR013088 GO:0006355|GO:0008270
Amo19g3302 352 ProSiteProfiles GATA-type zinc finger domain profile. 251 287 IPR000679 GO:0006355|GO:0043565
Amo19g3302 352 ProSitePatterns GATA-type zinc finger domain. 257 282 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3302 Amo-Chr19 145341635 145345132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3302 10 325 C2C2-Gata Transcription Factor Family AT1G08010 35.759 1.34e-44 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo19g3302 GATA 6.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3302 - - gmx:100815693 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo19g3302 19 145341635 145345132 Amo19g3302 19 145341635 145345132 ECH