Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3301 ATGGACAGAACCAGAACACCAATACAAACATGCTTAGATTCTCAACTATGGCACGCCTGCGCAGGCCCCATGGTTCAAATGCCACCTCTCAACACCAAAGTCTTGTACTTCCCACAAGGCCATGCTGAACACCAACAAGCCCATGCCCATGGTCGAAAACCCCATTTTGCCCCTGCCATGAAAACCCCCATTCCACCCTTCTTCCCTTGCACACTCACCGCCATCAAATACATGGCAGAACCTGAAACCGACGAGGTCTATGTCAAGATCACCCTCACCCCTCTCCTCTCAGACCCAGAAGAACACGATCATCATTGTAGTAGTAATCATAATAGTTTCTTGGACAATAATGGTGAAAAGCCTGCTTCTTTTGCAAAGACTCTAACACAATCCGATGCCAACAATGGCGGCGGTTTCTCTGTGCCTCGTTACTGCGCCGAAACCATTTTCCCAAGGCTTGATTACTCCGCAGAGCCTCCGGTTCAGACCATAATCGCAAAAGACGTGCATGGGCAGTGTTGGAAGTTCAGACACATTTATAGAGGCACGCCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCACAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTCCTCCGAGCCCAAAATGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGCATTGCTGCTGGAACCGCCACAAATACTAATATTACTACGACTAATAATGTTGGTTATGGTGGTGGTGAATGTAATTGTGTTGGTGAGGCTGTGAATTGTGCTGTGAATGGAAGGGCATTTGAGGTGGTGTATTATCCAAGAGGGAGCTCACCGGAGTTTTGTGTGAAGGCTTCTTCAGTGAGAGCTTCAATGCAGATTCAATGGTGTTCTGGTATGAGATTCAAGATGCCCTTTGAGACTGAGGACTCTTCCAGAATCAGTTGGTTCATGGGGACTATTTCTTCTGTCCAGCTTTCAGATCCTCTTCATTGGCCTCATTCTCCTTGGCGTCTTCTTCAGGTGGTATGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAATCCTTGGTTAGTTGAACTAGTCTCAAATGTGCCAAACTTTCATCTCTCTCCATTCTCACCACCAAGGAAGAAACAAAGGTTCCTACAAGACCAACCAGATTTTCAACTCATCAACCAATTTCCACCTGCATCATCATTCTCCACCATTCAAGATCATCAAGGCATACAGGGAGCCAGGCATGCCCATCAATTCGGGCTCGCTCCGCAAGATTTCCACATTCTTGATGGATTTCCAAGGCTTGATCATGCAGCACAACACCCTCATAGGCCTAGTTTTGGAATCTACAACAAGAACAACTCCGCCGCCACCAAGAACAATAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCAGAGTTTCAATAAGGAGGAGTCTTGTTCCAATGAAACAAAAGCACCACACATTTTGTTGTTTGGGAAGCTCATTCACACTGATCAGCAGAACCATTCATCAAACAGTTCAAATAGTGTTTATGAAGGAACTAATTCATCACTCAAGACATCAATTGAAAACTCTTCTGATGATGGAGGGTCTCCCTGGTTCAAAAATCAGCACAAGAATAATGATCTTGTTGGAACTGAAAACATTAACATATTGTGTATGGCCTTATAA 1698 0.4529 MDRTRTPIQTCLDSQLWHACAGPMVQMPPLNTKVLYFPQGHAEHQQAHAHGRKPHFAPAMKTPIPPFFPCTLTAIKYMAEPETDEVYVKITLTPLLSDPEEHDHHCSSNHNSFLDNNGEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAQNGDLCVGIRRAKKGGIAAGTATNTNITTTNNVGYGGGECNCVGEAVNCAVNGRAFEVVYYPRGSSPEFCVKASSVRASMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQLSDPLHWPHSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFSPPRKKQRFLQDQPDFQLINQFPPASSFSTIQDHQGIQGARHAHQFGLAPQDFHILDGFPRLDHAAQHPHRPSFGIYNKNNSAATKNNNNLEISCLLSVGNPGQSFNKEESCSNETKAPHILLFGKLIHTDQQNHSSNSSNSVYEGTNSSLKTSIENSSDDGGSPWFKNQHKNNDLVGTENINILCMAL* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3301 565 PANTHER AUXIN RESPONSE FACTOR 16 9 548 - -
Amo19g3301 565 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 548 IPR044835 GO:0003677|GO:0006355|GO:0009725
Amo19g3301 565 CDD B3_DNA 123 224 IPR003340 GO:0003677
Amo19g3301 565 Pfam B3 DNA binding domain 124 225 IPR003340 GO:0003677
Amo19g3301 565 SMART B3_2 124 226 IPR003340 GO:0003677
Amo19g3301 565 Pfam Auxin response factor 259 342 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Amo19g3301 565 SUPERFAMILY DNA-binding pseudobarrel domain 110 224 IPR015300 -
Amo19g3301 565 MobiDBLite consensus disorder prediction 508 543 - -
Amo19g3301 565 Gene3D - 296 370 - -
Amo19g3301 565 Gene3D - 122 226 IPR015300 -
Amo19g3301 565 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3301 Amo-Chr19 145321150 145323393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3301 1 552 B3 DNA Binding Superfamily AT4G30080 51.078 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Amo19g3301 B3 3.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3301 - - gmx:100803053 689.108