Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo19g3293 ATGGGTAATGTTGAAATCCCCAATTGGCTCAAAGGGTTGCCACTGGCACCTGAATTTCGACCTACTGATACCGAATTCGCCGACCCGATTGCTTATATTTCAAAGATTGAGAAGGAAGCTAGCAACTATGGGATATGTAAGATTATACCACCATTGCCCAAGCCTTCAAAAAAATACGTTTTTTCTAATTTGAATAAGTCCCTCTTGAAGGCCTCTGAATTGGGTCCAGAGAGCAATTCTTTAGGTTGTTGTAATTCTTCGAGAACGGATTCTAGGGATGTTAGTAGTAGTGATAGGCTGTTGAGGGCTGTCTTTACTACAAGGCAGCAAGAACTAGGGCAGAATGTGAAGAAAATCAGCAAAGGGAATGTTCAGAATCCACTGCCAGGTGGTCAAAAACAAGTTTGGCAGAGTGGGGAAGTCTATACACTTGATCAGTTTGAGTCGAAATCGAAGTCCTTTGCTAAAAGTGTGCTGGCTACGGTGAAGGAAGTTTCTCCACTGGTTATAGAGGCTATGTTTTGGAAGGCAACATCAGAGAAGCCTATATATATTGAATATGCCAATGATGTGCCTGGGTCTGCTTTTGGGGAATCACAGGGTCAATTTCTTTATAGTCATAGAAGACGAAGAAAAAGGACTTATTATAAGAGTAGGCCACATAGCACTGATTCTAAACAAACTGAAATGGATGGCATAGGAGATACCCAAATTGATGAGAATAAGGGTGCTTCTGCCAAAACTCATGCAGAACAATGTGTACAGTCCCAAACAGCTAGTACTGTGACACTTGCATCAAACGAATTTTCACAATCTTCTAGGGAAAAGGGTTCAGATGCTGCTGATGATGATATGGAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCATGGAACTTGCAAGTTATTGCACGCTCATCTGGCTCGCTAACACGTTTCATGCCCGATGATATTCCTGGTGTTACTTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTGGAGGATCATGAGCTTCACAGCTTGAATTTCCTTCACACTGGCTCTGCAAAGACTTGGTATGCTGTTCCTGGAGAATATGCCTTTGCTTTTGAGGAGGTCATTCGCTCTAAGGCATATGGTAGTAGTGTTGATCATTTAGCTGCTTTGAAACTTTTAGGTGAGAAAACAACTCTTATATCACCTGAGGTAGTTGTTGCATCTGGGATTCCTTGTTGCAGGTTAATACAGAATCCTGGTGAATTTGTTGTGACATTTCCAAGGGCTTACCATGTCGGATTCAGCCATGGTTTTAACTGTGGGGAGGCTGCTAACTTTGGAACTCCACAGTGGCTTACAGTAGCTAAGGAAGCTGCTGTGCGTAGAGCTGCTATGAATTATCTTCCAATGCTCTCACATCAGCAACTGCTTTACTTGCTGACCATGTCTTTTATTTCTAGAGTACCAAGAACATTATTACCTGGTGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAGGAAGAAAGAGAGTTTTTAGTAAAAAAGGCTTTCATAGAAGATATGCTGCAGGAAAACAAACTTCTATCCATTCTTCTTGGAAAGGAAGCAACTAAACAAGCTGTTTTATGGAATGCCGATTTACTGCTAGGTTCTAGCAAAGATTGTTCATTACCTGAAGTTTCTGCTGCTGAAACGGCCATGGTGGACATGCCAAATACTAGTTCGGGAGATAAGATTGGTCATAGTCTGATTGATGAGATGAGTTTGTATATGGAGAATCTGAATGGTCTATATCTTGATTGTGATGATCTTCCATCTCACTTCCAAACTGATTCAGGGGCATTGGCTTGTGTGGGCTGTGGAATCCTTGGTTTTCCATTTATGACTGTGGTACAACCATCTGAGAAATGGATGGAAACTCTTCCTGGTCAAGATTGCACTCTCAACTCTACTGCTCGTAGCTCAGTCTCTGGTAATGACTCTGTTTCTAAACTTCCTGCTGCAAAGGAGTTACCAGATCAATCATTTGATTGTAGTAATTGTTGGAACATGGCTAATAAATTTTTGAGGCCTCGGATTTTCTGCCTGGAACATGCAGTTCAGATAGTGGAGATGTTGCAGTGCAAAGGCGGAGCCAATGTGCTTATAATATGCCATTCAGACTATGAGAAGATAAAGGCACATGCCAGGGCAGTTGCAGAAGAGACACACATTGCATTTGATTATAACAATGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTCTCATTGACCTGGCAATTGATGGTGAGGAATATGATGAATGCGAAGACTGGACATCTAACTTGGGAATTAATCTGCACCATTGTGTTAATGCAAGAAATACGTCTCCATCTAAACAAGCTATTTGGACCCTGGCATTGGGCATGCTGTTCTCTGATAAAGGTCCTGGTTCACAATTTATAGCTATAAATTGGCAGTCTCGAAGAGCTCGCTCCAAAAGATTACATCATCTAGCTCCAATGAAACCTAAACCCAGTATTGCCATTCAGAAAAGGGAAGATGATGAGTTGGAGGGAAGAATAGATGATTCTATTGCCAAAAAGAAGTTAATTCAATATTCAAGAAGGAAGTTCAAGTCCAACAAAAATTCTTATTCTGGATCAAGCATTGTCCATGAATTGCAAGAGAAGTCCAAGATTGTGTCGGCTGATTCGAGTGGGGATCATTATAAATGTGGTTCTAAAGGGGAGCTTGATGCTGATAATTTCAAAAGTGATTGTGCTTTGCCAAATGCATCTGCTTCCATTGCAGTGTCTCCAGTGGATCATGAAATTCAGGGTACTGAATTTCCCAATAGCATTAGCTTGAATGCTGATACTTCACAAACTTCTAATTCCTCTCCAGGTCATCGTTTCGTGAATGAAAATGTTGAAACTGAGATTGAGAATCACACTCTGCAGGATTTAGCAATAGATGGAGAAAAAGATGAACAATCTAAGATTCATCATGATACTGGTGTTTTGGAAACGAGTGGCAAGGAGGAGCTTGGGTGTCAGGACAATAAATATTCTAGATCACTTGTGAATTCGACAGAGAGAAATGTTGACATTGATTGTAAATGTGATAGCTTGGATTTGGATGAAGGATTGCATCGAGAGAATCCATCTGCCTGCAAAAGCAACAATGAAGAAGCTGCTTCATCTAGTGTCTCATTGGCAAATCAACCTGTACTTGCCTCTATAGACGACGCCTTAACTGAATTGGCTTCGGAGTCTGCAAAGCAGTGCAAGGTCCAAGAGAATAATACAATTTACAAGGAACCTGTTTCTAGTAATGTTGCAAGAGGCAATACTAGAAGTGAAGCCATCTTGGAGTTAGGATGTTCTGAAGTTGCAGTAGAAACTTGTTCTCAAGAAGAAAATGAATTGAAAATCCAGCCAAATAATAGAATTAATGAGGAAGATAACTCAAGTCCCAAGACACCATTAAAGGAAGATATTAATGGAAGTGAAGATAAATTGTCACAAGATATGTTGACAGAGCAGGAAAGCTGTAAGTTGAGTAATCCGGTTCCCAGATCAAATGCTCGGAAGAAAAGAAAGACGGAACTGGACCAGATAACAGAGAATCAACTCAGCTGCAACAACTTTATTCGAAGTCCGTGTGAAGGTCTGAGGCCAAGAGCTACGAAGATTGCCCCTGAGAAAAGTGAGGGAGATGCCGACCAAGATGACAAGGAGAATCCGAAGGCTAGAAGGGATCGGAAACCTTCTGAAGTTCCAGCTGCACACAAGAACAAAAAAGACGATGTTGAAAAGCCCCACAGGTGTGACCTTGATGGTTGCAGTATGAGTTTCATGACAAAGGGTGAGTTACAGTTGCACAGGCGTAACCTTTGCCCTCACAAAGGGTGTGGCAAGAAGTTCAGCTCCCACAAATACGCTCTCCTTCATCAGCGTGTTCATGATGACAAGAGGCCCCTCAAGTGCCCATGGAAAGGTTGTACCATGTCATTCAAGTGGGCATGGGCAAGGACGGAGCACATACGGGTGCACACTGGGGAGAAGCCCTATAAATGCAAGGTCGAGGGGTGCGGCCTTTCTTTCAGGTTTGTGTCGGATTTTAGCCGGCACCGGAGGAAAACAGGTCACTACGTGAAATCTGATTGA 4149 0.4215 MGNVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEASNYGICKIIPPLPKPSKKYVFSNLNKSLLKASELGPESNSLGCCNSSRTDSRDVSSSDRLLRAVFTTRQQELGQNVKKISKGNVQNPLPGGQKQVWQSGEVYTLDQFESKSKSFAKSVLATVKEVSPLVIEAMFWKATSEKPIYIEYANDVPGSAFGESQGQFLYSHRRRRKRTYYKSRPHSTDSKQTEMDGIGDTQIDENKGASAKTHAEQCVQSQTASTVTLASNEFSQSSREKGSDAADDDMEGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSLNFLHTGSAKTWYAVPGEYAFAFEEVIRSKAYGSSVDHLAALKLLGEKTTLISPEVVVASGIPCCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLTVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKKAFIEDMLQENKLLSILLGKEATKQAVLWNADLLLGSSKDCSLPEVSAAETAMVDMPNTSSGDKIGHSLIDEMSLYMENLNGLYLDCDDLPSHFQTDSGALACVGCGILGFPFMTVVQPSEKWMETLPGQDCTLNSTARSSVSGNDSVSKLPAAKELPDQSFDCSNCWNMANKFLRPRIFCLEHAVQIVEMLQCKGGANVLIICHSDYEKIKAHARAVAEETHIAFDYNNVPLDTASPENLTLIDLAIDGEEYDECEDWTSNLGINLHHCVNARNTSPSKQAIWTLALGMLFSDKGPGSQFIAINWQSRRARSKRLHHLAPMKPKPSIAIQKREDDELEGRIDDSIAKKKLIQYSRRKFKSNKNSYSGSSIVHELQEKSKIVSADSSGDHYKCGSKGELDADNFKSDCALPNASASIAVSPVDHEIQGTEFPNSISLNADTSQTSNSSPGHRFVNENVETEIENHTLQDLAIDGEKDEQSKIHHDTGVLETSGKEELGCQDNKYSRSLVNSTERNVDIDCKCDSLDLDEGLHRENPSACKSNNEEAASSSVSLANQPVLASIDDALTELASESAKQCKVQENNTIYKEPVSSNVARGNTRSEAILELGCSEVAVETCSQEENELKIQPNNRINEEDNSSPKTPLKEDINGSEDKLSQDMLTEQESCKLSNPVPRSNARKKRKTELDQITENQLSCNNFIRSPCEGLRPRATKIAPEKSEGDADQDDKENPKARRDRKPSEVPAAHKNKKDDVEKPHRCDLDGCSMSFMTKGELQLHRRNLCPHKGCGKKFSSHKYALLHQRVHDDKRPLKCPWKGCTMSFKWAWARTEHIRVHTGEKPYKCKVEGCGLSFRFVSDFSRHRRKTGHYVKSD* 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo19g3293 1382 ProSitePatterns Zinc finger C2H2 type domain signature. 1353 1377 IPR013087 -
Amo19g3293 1382 ProSiteProfiles Zinc finger C2H2 type domain profile. 1351 1382 IPR013087 -
Amo19g3293 1382 SMART c2h2final6 1268 1290 IPR013087 -
Amo19g3293 1382 SMART c2h2final6 1351 1377 IPR013087 -
Amo19g3293 1382 SMART c2h2final6 1291 1315 IPR013087 -
Amo19g3293 1382 SMART c2h2final6 1321 1345 IPR013087 -
Amo19g3293 1382 ProSiteProfiles JmjN domain profile. 16 57 IPR003349 -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 218 246 - -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 1222 1266 - -
Amo19g3293 1382 ProSitePatterns Zinc finger C2H2 type domain signature. 1293 1315 IPR013087 -
Amo19g3293 1382 ProSiteProfiles Zinc finger C2H2 type domain profile. 1291 1320 IPR013087 -
Amo19g3293 1382 Gene3D Cupin 9 465 - -
Amo19g3293 1382 Gene3D Classic Zinc Finger 1292 1341 - -
Amo19g3293 1382 SUPERFAMILY beta-beta-alpha zinc fingers 1331 1373 IPR036236 -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 829 848 - -
Amo19g3293 1382 SUPERFAMILY Clavaminate synthase-like 293 458 - -
Amo19g3293 1382 ProSitePatterns Zinc finger C2H2 type domain signature. 1323 1345 IPR013087 -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 1218 1266 - -
Amo19g3293 1382 ProSiteProfiles Zinc finger C2H2 type domain profile. 1321 1350 IPR013087 -
Amo19g3293 1382 ProSiteProfiles JmjC domain profile. 292 461 IPR003347 -
Amo19g3293 1382 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 1372 - -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 210 290 - -
Amo19g3293 1382 Pfam jmjN domain 17 50 IPR003349 -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 1137 1198 - -
Amo19g3293 1382 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 1 1372 - -
Amo19g3293 1382 SMART JmjN_1 15 55 IPR003349 -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 1150 1172 - -
Amo19g3293 1382 SUPERFAMILY beta-beta-alpha zinc fingers 1292 1324 IPR036236 -
Amo19g3293 1382 Gene3D Classic Zinc Finger 1241 1291 - -
Amo19g3293 1382 Gene3D Classic Zinc Finger 1342 1382 - -
Amo19g3293 1382 MobiDBLite consensus disorder prediction 248 274 - -
Amo19g3293 1382 SMART cupin_9 292 461 IPR003347 -
Amo19g3293 1382 Pfam JmjC domain, hydroxylase 325 444 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo19g3293 Amo-Chr19 144678259 144686083 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo19g3293 1 870 C2H2 Transcription Factor Family AT5G04240 57.254 0.0 970
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo19g3293 JmjC 4.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo19g3293 - - adu:107467970 2700.62